View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21334_low_6 (Length: 288)
Name: NF21334_low_6
Description: NF21334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21334_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 4133854 - 4134035
Alignment:
| Q |
19 |
tattccatattcatccatcggtttgaagagaaagagtttttgccataaaaaggaatgatgctcaaatatattgcactcgcagcagtagtcctatattagt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4133854 |
tattccatattcatccatcggtttgaagagaaagagtttttgccataaaaaggaatgatgctcaaatatattgcactcgcagcagtagtactatattagt |
4133953 |
T |
|
| Q |
119 |
accaaaaaggaagaaagagtttttctatattgtgacctctaaaattgcataatagaaaaaccgtcaaatatgagataggatc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
4133954 |
accaaaaaggaagaaagagtttttctatattgtgacctctaaaattgcataatagaaaaactgtcaaatatgagataggatc |
4134035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 196 - 269
Target Start/End: Original strand, 4134056 - 4134129
Alignment:
| Q |
196 |
ggatccgttgagaccaaattttaacctttcatttcattttaatcaatgacttattattactcactaaaaaccta |
269 |
Q |
| |
|
|||| |||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4134056 |
ggattcgttgacaccaaatcttaacctttcatttcattttaatcaatgacttataattactcactaaaaaccta |
4134129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 186 - 264
Target Start/End: Complemental strand, 14826220 - 14826142
Alignment:
| Q |
186 |
atatgagataggatccgttgagaccaaattttaacctttcatttcattttaatcaatgacttattattactcactaaaa |
264 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
14826220 |
atatgagataggatccgttgacaccaaatcttaacctttcatttcattttaatcaatggtttataattactcactaaaa |
14826142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 234
Target Start/End: Original strand, 3654027 - 3654075
Alignment:
| Q |
186 |
atatgagataggatccgttgagaccaaattttaacctttcatttcattt |
234 |
Q |
| |
|
||||||||||||||||||||| |||||||| || ||||| |||| |||| |
|
|
| T |
3654027 |
atatgagataggatccgttgacaccaaattatatcctttgatttgattt |
3654075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University