View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21335_low_1 (Length: 495)
Name: NF21335_low_1
Description: NF21335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21335_low_1 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 23 - 492
Target Start/End: Complemental strand, 17390721 - 17390252
Alignment:
| Q |
23 |
tataaaagatttgtatcatcacatttggattaggtatatgagtgaaattacatgttcaataagacgtctcttgcaataagaaaataagggtcgttaacag |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17390721 |
tataaaagatttgtatcatcacatttggattaggtatatgagtgaaattacatgttcaataagacgtctcttgcaataagaaaataagggtcgttaacag |
17390622 |
T |
|
| Q |
123 |
attattcaatgctagatccaaacttagcattcttataagtttccttagtgtttgaatcacgaatgatagtgtgaatctcacaatctccttctttatcatt |
222 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
17390621 |
attattcattgctagatccaaacttagcattcttataagtttcctcagtatttgaatcacgaatgatagtgtgaatctcacaatctccttttttatcatt |
17390522 |
T |
|
| Q |
223 |
gttgttcttcacataaattttgtaaacttgcactagtagtcccttttgattttcatctcaatttcatccttttgattcttcgaatatgacatctaggtcg |
322 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||| |
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| T |
17390521 |
gttgttcttcacataacttttgtaaacttgcactagtattcccttttgattttcatctcaatttcatccttttgattcttcaaatatgccatctagatcg |
17390422 |
T |
|
| Q |
323 |
attattactttattttgtgagggatcaagaaccttgtaacctttatattaatttatattcccaaaatgaacacatttaacaccttttgcatcaagctttt |
422 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
17390421 |
attattactttattttgtgagggatcaagaaccttgtaacctttatattaatttatattcccaaaatgaacacatttgacaccttttgcatcaagctttt |
17390322 |
T |
|
| Q |
423 |
ctcttaactttataatcccaaaaagaacacaaagactctaaactaatagacaatagacttcatatcactc |
492 |
Q |
| |
|
||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
17390321 |
ctctttaatttataatcccaaaatgaacacaaagactctaaactaatagacaatagacttcaaatcactc |
17390252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 23 - 420
Target Start/End: Complemental strand, 13706678 - 13706282
Alignment:
| Q |
23 |
tataaaagatttgtatcatcacatttggattaggtatatgagtgaaattacatgttcaataagacgtctcttgcaataagaaaataagggtcgttaacag |
122 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
13706678 |
tataaaagatttgtat-atctcatttggattaggtatatgagtgaaattacatgttcaataagacgtctcttgcaacaagaaaataagggtcgttaacag |
13706580 |
T |
|
| Q |
123 |
attattcaatgctagatccaaacttagcattcttataagtttccttagtgtttgaatcacgaatgatagtgtgaatctcacaatctccttctttatcatt |
222 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||| ||| ||||||||||||||||||||| ||||| |||||| |
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| T |
13706579 |
attattcattgctagatccaaacttagcattcttataagtttcctcactgtttgaatcacagatgttagtgtgaatctcacaatctcgttcttcatcatt |
13706480 |
T |
|
| Q |
223 |
gttgttcttcacataaattttgtaaacttgcactagtagtcccttttgattttcatctcaatttcatccttttgattcttcgaatatgacatctaggtcg |
322 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| || |||||||||| |||| |
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|
| T |
13706479 |
gttgttcttcacatcccttttgtaaacttgcactagtagtcccttttgattttcatctcaatttcatcattttaattcttcaaaaatgacatctatgtcg |
13706380 |
T |
|
| Q |
323 |
attattactttattttgtgagggatcaagaaccttgtaacctttatattaatttatattcccaaaatgaacacatttaacaccttttgcatcaagctt |
420 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
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| T |
13706379 |
attattactttattttgcgagcgatcaagaaccttgtaacctttatattaatttataatcccaaaatgaacacatttgacaccttttgcatcaagctt |
13706282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 23 - 420
Target Start/End: Complemental strand, 13714169 - 13713773
Alignment:
| Q |
23 |
tataaaagatttgtatcatcacatttggattaggtatatgagtgaaattacatgttcaataagacgtctcttgcaataagaaaataagggtcgttaacag |
122 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
13714169 |
tataaaagatttgtat-atctcatttggattaggtatatgagtgaaattacatgttcaataagacgtctcttgcaacaagaaaataagggtcgttaacag |
13714071 |
T |
|
| Q |
123 |
attattcaatgctagatccaaacttagcattcttataagtttccttagtgtttgaatcacgaatgatagtgtgaatctcacaatctccttctttatcatt |
222 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||| ||| ||||||||||||||||||||| ||||| |||||| |
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| T |
13714070 |
attattcattgctagatccaaacttagcattcttataagtttcctcactgtttgaatcacagatgttagtgtgaatctcacaatctcgttcttcatcatt |
13713971 |
T |
|
| Q |
223 |
gttgttcttcacataaattttgtaaacttgcactagtagtcccttttgattttcatctcaatttcatccttttgattcttcgaatatgacatctaggtcg |
322 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| || |||||||||| |||| |
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| T |
13713970 |
gttgttcttcacatcccttttgtaaacttgcactagtagtcccttttgattttcatctcaatttcatcattttaattcttcaaaaatgacatctatgtcg |
13713871 |
T |
|
| Q |
323 |
attattactttattttgtgagggatcaagaaccttgtaacctttatattaatttatattcccaaaatgaacacatttaacaccttttgcatcaagctt |
420 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
13713870 |
attattactttattttgcgagcgatcaagaaccttgtaacctttatattaatttataatcccaaaatgaacacatttgacaccttttgcatcaagctt |
13713773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 452 - 492
Target Start/End: Complemental strand, 13706240 - 13706200
Alignment:
| Q |
452 |
caaagactctaaactaatagacaatagacttcatatcactc |
492 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||||| |
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|
| T |
13706240 |
caaagactctaaattaatagacaatagacttcaaatcactc |
13706200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 452 - 492
Target Start/End: Complemental strand, 13713731 - 13713691
Alignment:
| Q |
452 |
caaagactctaaactaatagacaatagacttcatatcactc |
492 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||||| |
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|
| T |
13713731 |
caaagactctaaattaatagacaatagacttcaaatcactc |
13713691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 454 - 492
Target Start/End: Complemental strand, 13700302 - 13700264
Alignment:
| Q |
454 |
aagactctaaactaatagacaatagacttcatatcactc |
492 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
13700302 |
aagactctaaactaatagacaataaacttcaaatcactc |
13700264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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