View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21335_low_2 (Length: 367)
Name: NF21335_low_2
Description: NF21335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21335_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 13 - 350
Target Start/End: Original strand, 40326806 - 40327140
Alignment:
| Q |
13 |
gagacaaaaaatcatcatctgttgcagaaaatgcccttttgataaccttttctgaaatcccttgatcctcagctgtaaaacctgatttacccacnnnnnn |
112 |
Q |
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| T |
40326806 |
gagacagaaaatcatcatctgttgcagaaaatgcccttttgataaccttttctgaaatcccttgatcttcagctgtaaaacctgatttacccacaaaaaa |
40326905 |
T |
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| Q |
113 |
ntcatcatataaggataccaatattttatataccaataattacagtggtactaatgaccattttacaactgtttcagacaaaatttgaacccggtccctt |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40326906 |
atcatcatataaggataccaatattttatataccaataattacagtggtactaatggccattttacaactgtttcagacaaaatttgaacccggtccctt |
40327005 |
T |
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| Q |
213 |
gaggttataaggtcaaa--ctcttgcaactctaggaaacaaatgtttccgtgtatgtttggaatcacgataattaaagcttcatatgtagtttttgtcaa |
310 |
Q |
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|||||||||||| |||| ||| || | |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
40327006 |
gaggttataagggcaaaacctcatgga----taggaaacaaatatttccgtgtatgtttggaatcacgataattaaagcttcatatatagtttttgtcaa |
40327101 |
T |
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| Q |
311 |
aattagggcgacacttgtgattatggaaaaaaggactatg |
350 |
Q |
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| T |
40327102 |
aattacggcgacacttgtgattatgg-aaaaaggactatg |
40327140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 195 - 230
Target Start/End: Original strand, 7047094 - 7047129
Alignment:
| Q |
195 |
atttgaacccggtcccttgaggttataaggtcaaac |
230 |
Q |
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| T |
7047094 |
atttgaactcggtcccttgaggttataaggtcaaac |
7047129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 234
Target Start/End: Original strand, 32190518 - 32190546
Alignment:
| Q |
206 |
gtcccttgaggttataaggtcaaactctt |
234 |
Q |
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| T |
32190518 |
gtcccttgaggttataaggtcaaactctt |
32190546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 234
Target Start/End: Original strand, 53028035 - 53028063
Alignment:
| Q |
206 |
gtcccttgaggttataaggtcaaactctt |
234 |
Q |
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| T |
53028035 |
gtcccttgaggttataaggtcaaactctt |
53028063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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