View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21335_low_3 (Length: 331)
Name: NF21335_low_3
Description: NF21335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21335_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 15 - 315
Target Start/End: Complemental strand, 15013215 - 15012915
Alignment:
| Q |
15 |
ggcaataaccttttgtggggttgtgatgaaagtaaccatggtgcttttttgatgatgattcgtatgtcagagagtgaaaaaccatggttttgaaagaagt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
15013215 |
ggcaataaccttttgtggggttgtgatgaaagtaaccatggtgcttttttgatgatgatgcgtatgtcagagtgtgaaaaaccatggttttgaaagaagt |
15013116 |
T |
|
| Q |
115 |
tgatgactgagtcaggattatctggggtattgaaacgaacttgcctgaggttgaaagctttgagagctgattcagttgagaaatcaaaattgttgataag |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15013115 |
tgatgactgagtcaggattatctggggtattgaaacgaacttgcctgaggttgaaagctttgagagctgattcagttgagaaatcaaaattgttgataag |
15013016 |
T |
|
| Q |
215 |
ataagatacagcaaaaggttgtgtgattgattctgattgagatgttgtgatgctgctgcatttgagtgaaaatgggaatgagaagtggttgttgaatttt |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
15013015 |
ataagatacagcaaaaggttgtgtgattgattctgattgagatgttgtgatgctgctgcatttgagtgagaatgggaatgagaagtggttgttgaatttt |
15012916 |
T |
|
| Q |
315 |
a |
315 |
Q |
| |
|
| |
|
|
| T |
15012915 |
a |
15012915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 15 - 315
Target Start/End: Complemental strand, 31969132 - 31968832
Alignment:
| Q |
15 |
ggcaataaccttttgtggggttgtgatgaaagtaaccatggtgcttttttgatgatgattcgtatgtcagagagtgaaaaaccatggttttgaaagaagt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
31969132 |
ggcaataaccttttgtggggttgtgatgaaagtaaccatggtgcttttttgatgaagatgcgtatgtcagagtttgaaaaaccatggttttgaaagaagg |
31969033 |
T |
|
| Q |
115 |
tgatgactgagtcaggattatctggggtattgaaacgaacttgcctgaggttgaaagctttgagagctgattcagttgagaaatcaaaattgttgataag |
214 |
Q |
| |
|
|||| || || ||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31969032 |
tgataacagaatcaggattatctgaggtattgaaacgaacctgcttgaggttgaaagctttgagagctgattcagttgagaaatcaaaattgttgataag |
31968933 |
T |
|
| Q |
215 |
ataagatacagcaaaaggttgtgtgattgattctgattgagatgttgtgatgctgctgcatttgagtgaaaatgggaatgagaagtggttgttgaatttt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31968932 |
ataagatacagcaaaaggttgtgtgattgattctgattgagatgttgtgatgctgctgcatttgagtgaaaatgggaatgagaagtggttgttgaatttt |
31968833 |
T |
|
| Q |
315 |
a |
315 |
Q |
| |
|
| |
|
|
| T |
31968832 |
a |
31968832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 15 - 315
Target Start/End: Complemental strand, 15019707 - 15019407
Alignment:
| Q |
15 |
ggcaataaccttttgtggggttgtgatgaaagtaaccatggtgcttttttgatgatgattcgtatgtcagagagtgaaaaaccatggttttgaaagaagt |
114 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| || |||| ||| |||||| |||| | ||| ||||||| |
|
|
| T |
15019707 |
ggcaataacattttgtggggttgtgatgaaagtaaccaaggtgcttttttgatgatgatgcgaatgttggagtttgaaaagccatagctttttaagaagt |
15019608 |
T |
|
| Q |
115 |
tgatgactgagtcaggattatctggggtattgaaacgaacttgcctgaggttgaaagctttgagagctgattcagttgagaaatcaaaattgttgataag |
214 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15019607 |
tgatgactgagtcaggcctatctggggtattgaaacgaacgtgcctgaggttgaaagctttgagagctgattcagttgagaaatcaaaattgttgataag |
15019508 |
T |
|
| Q |
215 |
ataagatacagcaaaaggttgtgtgattgattctgattgagatgttgtgatgctgctgcatttgagtgaaaatgggaatgagaagtggttgttgaatttt |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
15019507 |
ataagatacagcaaaaggttgtgtgattgattctgattgagatgttgtgatgctgctgcatttgagtgaaagtgggaatgagaagtggttgttgaatttt |
15019408 |
T |
|
| Q |
315 |
a |
315 |
Q |
| |
|
| |
|
|
| T |
15019407 |
a |
15019407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 15 - 310
Target Start/End: Complemental strand, 14528733 - 14528438
Alignment:
| Q |
15 |
ggcaataaccttttgtggggttgtgatgaaagtaaccatggtgcttttttgatgatgattcgtatgtcagagagtgaaaaaccatggttttgaaagaagt |
114 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| || |||| ||||| ||||||| | ||||||| ||||| |||||||||||| |
|
|
| T |
14528733 |
ggcaaaaaccttttgtggggttgtgatgaaagtaaccatggtgctcttctgatcatgatgcgtatgttgtcgtgtgaaaagccatgattttgaaagaagg |
14528634 |
T |
|
| Q |
115 |
tgatgactgagtcaggattatctggggtattgaaacgaacttgcctgaggttgaaagctttgagagctgattcagttgagaaatcaaaattgttgataag |
214 |
Q |
| |
|
|||||||||| ||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||| |||||| ||||||||||||| || |
|
|
| T |
14528633 |
tgatgactgaatcaggtttatctgcggtattgaaacgaacttgcttgaggttgaaagctttgagagcagattcatgtgagaacccaaaattgttgatgag |
14528534 |
T |
|
| Q |
215 |
ataagatacagcaaaaggttgtgtgattgattctgattgagatgttgtgatgctgctgcatttgagtgaaaatgggaatgagaagtggttgttgaa |
310 |
Q |
| |
|
||||||| |||| || || ||||||| |||||| ||||||||||||||| ||| | | | ||||||||||||||||||||||||| | |||||| |
|
|
| T |
14528533 |
ataagatgcagcgaatggatgtgtgactgattcagattgagatgttgtggtgcagaatcttgtgagtgaaaatgggaatgagaagtgttggttgaa |
14528438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 15 - 310
Target Start/End: Complemental strand, 14542959 - 14542664
Alignment:
| Q |
15 |
ggcaataaccttttgtggggttgtgatgaaagtaaccatggtgcttttttgatgatgattcgtatgtcagagagtgaaaaaccatggttttgaaagaagt |
114 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| || |||| ||||| ||||||| | ||||||| ||||| |||||||||||| |
|
|
| T |
14542959 |
ggcaaaaaccttttgtggggttgtgatgaaagtaaccatggtgctcttctgatcatgatgcgtatgttgtcgtgtgaaaagccatgattttgaaagaagg |
14542860 |
T |
|
| Q |
115 |
tgatgactgagtcaggattatctggggtattgaaacgaacttgcctgaggttgaaagctttgagagctgattcagttgagaaatcaaaattgttgataag |
214 |
Q |
| |
|
|||||||||| ||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||| |||||| ||||||||||||| || |
|
|
| T |
14542859 |
tgatgactgaatcaggtttatctgcggtattgaaacgaacttgcttgaggttgaaagctttgagagcagattcatgtgagaacccaaaattgttgatgag |
14542760 |
T |
|
| Q |
215 |
ataagatacagcaaaaggttgtgtgattgattctgattgagatgttgtgatgctgctgcatttgagtgaaaatgggaatgagaagtggttgttgaa |
310 |
Q |
| |
|
||||||| |||| || || ||||||| |||||| ||||||||||||||| ||| | | | ||||||||| | ||||||||||||| | |||||| |
|
|
| T |
14542759 |
ataagatgcagcgaatggatgtgtgactgattcagattgagatgttgtggtgcagaatcttgtgagtgaaatttggaatgagaagtgttggttgaa |
14542664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 17 - 226
Target Start/End: Original strand, 15004230 - 15004439
Alignment:
| Q |
17 |
caataaccttttgtggggttgtgatgaaagtaaccatggtgcttttttgatgatgattcgtatgtcagagagtgaaaaaccatggttttgaaagaagttg |
116 |
Q |
| |
|
|||||| | |||||||||||| |||||||||||||| ||||||||| |||||||||| ||||||| | ||||||||||||||| |||||||||||| || |
|
|
| T |
15004230 |
caataaacctttgtggggttgcgatgaaagtaaccaaggtgcttttgtgatgatgatgcgtatgttatcgagtgaaaaaccatgattttgaaagaaggtg |
15004329 |
T |
|
| Q |
117 |
atgactgagtcaggattatctggggtattgaaacgaacttgcctgaggttgaaagctttgagagctgattcagttgagaaatcaaaattgttgataagat |
216 |
Q |
| |
|
|| || || ||||||||||||||||||||||||||||| ||| || ||||||||||||||||| |||||||||||||||| |||||||||||| ||| | |
|
|
| T |
15004330 |
ataacagaatcaggattatctggggtattgaaacgaacctgcttgttgttgaaagctttgagagttgattcagttgagaaaccaaaattgttgacaaggt |
15004429 |
T |
|
| Q |
217 |
aagatacagc |
226 |
Q |
| |
|
| |||||||| |
|
|
| T |
15004430 |
atgatacagc |
15004439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 15 - 239
Target Start/End: Complemental strand, 14520123 - 14519899
Alignment:
| Q |
15 |
ggcaataaccttttgtggggttgtgatgaaagtaaccatggtgcttttttgatgatgattcgtatgtcagagagtgaaaaaccatggttttgaaagaagt |
114 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| | | ||||||| |||||||||||||||||| |
|
|
| T |
14520123 |
ggcaataccattttgtggggttgtgatgaaagtaaccatggtgcttttgtgatgatgatgcgtatgttatcgtgtgaaaagccatggttttgaaagaagg |
14520024 |
T |
|
| Q |
115 |
tgatgactgagtcaggattatctggggtattgaaacgaacttgcctgaggttgaaagctttgagagctgattcagttgagaaatcaaaattgttgataag |
214 |
Q |
| |
|
|||| || || ||||||||||||||||||||||||||||| || ||| |||||||||||||||||| |||||| ||||||| |||| ||||||| || |
|
|
| T |
14520023 |
tgataacagaatcaggattatctggggtattgaaacgaacctgtctgttgttgaaagctttgagagccgattcatgtgagaaaccaaatttgttgacgag |
14519924 |
T |
|
| Q |
215 |
ataagatacagcaaaaggttgtgtg |
239 |
Q |
| |
|
|| ||||||||||| ||||||||| |
|
|
| T |
14519923 |
gtatgatacagcaaatggttgtgtg |
14519899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 15 - 251
Target Start/End: Complemental strand, 14512283 - 14512047
Alignment:
| Q |
15 |
ggcaataaccttttgtggggttgtgatgaaagtaaccatggtgcttttttgatgatgattcgtatgtcagagagtgaaaaaccatggttttgaaagaagt |
114 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| || |||| ||||| ||||||| | ||||||| ||||| |||||||||||| |
|
|
| T |
14512283 |
ggcaaaaaccttttgtggggttgtgatgaaagtaaccatggtgctcttctgatcatgatgcgtatgttgtcgtgtgaaaagccatgattttgaaagaagg |
14512184 |
T |
|
| Q |
115 |
tgatgactgagtcaggattatctggggtattgaaacgaacttgcctgaggttgaaagctttgagagctgattcagttgagaaatcaaaattgttgataag |
214 |
Q |
| |
|
|||||||||| ||||| ||||||| ||||||||||||||| ||| || |||||||| |||||||||||||||| || |||| ||||||||||||| || |
|
|
| T |
14512183 |
tgatgactgaatcaggtttatctgcggtattgaaacgaacatgcttgtagttgaaagatttgagagctgattcatgtgtgaaaccaaaattgttgatgag |
14512084 |
T |
|
| Q |
215 |
ataagatacagcaaaaggttgtgtgattgattctgat |
251 |
Q |
| |
|
||||||| |||| || || ||||||| |||||||||| |
|
|
| T |
14512083 |
ataagatgcagcgaatggatgtgtgactgattctgat |
14512047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 15 - 250
Target Start/End: Complemental strand, 14533967 - 14533732
Alignment:
| Q |
15 |
ggcaataaccttttgtggggttgtgatgaaagtaaccatggtgcttttttgatgatgattcgtatgtcagagagtgaaaaaccatggttttgaaagaagt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||| ||||||| ||| || |||||||||||||||||||||| |
|
|
| T |
14533967 |
ggcaataaccttttgtggggttgtgatgaaagtaaccaaggtgccttttggatgatgatgcgtatgttggagtttggaaaaccatggttttgaaagaagg |
14533868 |
T |
|
| Q |
115 |
tgatgactgagtcaggattatctggggtattgaaacgaacttgcctgaggttgaaagctttgagagctgattcagttgagaaatcaaaattgttgataag |
214 |
Q |
| |
|
|||| || || |||| |||||||||||||||||||||||| ||| || |||||||||||||||||| |||||| |||||| ||||||||||||| || |
|
|
| T |
14533867 |
tgataacagaatcagcattatctggggtattgaaacgaacctgcttgttgttgaaagctttgagagcagattcatgtgagaatccaaaattgttgatgag |
14533768 |
T |
|
| Q |
215 |
ataagatacagcaaaaggttgtgtgattgattctga |
250 |
Q |
| |
|
|| ||||||| || || |||||| |||||||||| |
|
|
| T |
14533767 |
gtatgatacagagaatggatgtgtgtttgattctga |
14533732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 15 - 301
Target Start/End: Complemental strand, 15007805 - 15007519
Alignment:
| Q |
15 |
ggcaataaccttttgtggggttgtgatgaaagtaaccatggtgcttttttgatgatgattcgtatgtcagagagtgaaaaaccatggttttgaaagaagt |
114 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| ||||| | |||||||| ||||||| | ||||||| ||||| |||||||||||| |
|
|
| T |
15007805 |
ggcaataacattttgtggggttgtgatgaaagtaaccatggttcttttctaatgatgatgcgtatgttttcgtgtgaaaagccatgattttgaaagaagg |
15007706 |
T |
|
| Q |
115 |
tgatgactgagtcaggattatctggggtattgaaacgaacttgcctgaggttgaaagctttgagagctgattcagttgagaaatcaaaattgttgataag |
214 |
Q |
| |
|
||| ||||| | ||| || || |||||||||||||||| || || |||||||||||| ||||| |||| || ||||||| ||||||||| ||| || |
|
|
| T |
15007705 |
tgagaactgaattaggcttttcaagggtattgaaacgaacctgtttgttgttgaaagctttaagagcagattgaggtgagaaaccaaaattgtcgatgag |
15007606 |
T |
|
| Q |
215 |
ataagatacagcaaaaggttgtgtgattgattctgattgagatgttgtgatgctgctgcatttgagtgaaaatgggaatgagaagtg |
301 |
Q |
| |
|
|| ||| |||| || || || ||| | ||||||||| ||||||||| ||||| | | ||||||||| ||||||||||||||| |
|
|
| T |
15007605 |
gtaggatgcagcgaatgggtgagtgttggattctgatgttgatgttgtggtgctgaatcttgtgagtgaaattgggaatgagaagtg |
15007519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 27 - 226
Target Start/End: Complemental strand, 14547094 - 14546895
Alignment:
| Q |
27 |
ttgtggggttgtgatgaaagtaaccatggtgcttttttgatgatgattcgtatgtcagagagtgaaaaaccatggttttgaaagaagttgatgactgagt |
126 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| | |||||||||||||| |||||| |||||||| || | |||| ||||| ||||| ||||| | |
|
|
| T |
14547094 |
ttgtggggttgtaatgaaagtaaccatggtgcttttctaatgatgattcgtatatcagagtgtgaaaaatcacgatttttgaagaaattgataactgaat |
14546995 |
T |
|
| Q |
127 |
caggattatctggggtattgaaacgaacttgcctgaggttgaaagctttgagagctgattcagttgagaaatcaaaattgttgataagataagatacagc |
226 |
Q |
| |
|
|||||| |||| || |||||| |||| || || ||||||||| |||||||| ||| || ||||||| | |||||||||||||| || |||||||| |
|
|
| T |
14546994 |
taggattttctgcggatttgaaaagaacctgattgttgttgaaagccttgagagcagatagaggtgagaaaccgaaattgttgataaggtatgatacagc |
14546895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 263
Target Start/End: Original strand, 17357109 - 17357345
Alignment:
| Q |
27 |
ttgtggggttgtgatgaaagtaaccatggtgcttttttgatgatgattcgtatgtcagagagtgaaaaaccatggttttgaaagaagttgatgactgagt |
126 |
Q |
| |
|
||||||| |||| |||||| ||||||||||||||| | |||||||||| ||||| ||| ||| |||| || | |||| ||||| ||||| ||||| | |
|
|
| T |
17357109 |
ttgtgggattgtaatgaaacaaaccatggtgcttttctattgatgattcgaatgtcggagtgtgcaaaatcacgatttttgaagaaattgataactgaat |
17357208 |
T |
|
| Q |
127 |
caggattatctggggtattgaaacgaacttgcctgaggttgaaagctttgagagctgatt-cagttgagaaatcaaaattgttgataagataagatacag |
225 |
Q |
| |
|
||| || |||| |||||| |||| || || |||||||||||||| ||| |||| ||| | |||| ||||||||| ||| ||||| ||||||| |
|
|
| T |
17357209 |
taggttt-tctgcaaatttgaaaagaacatgtttgttgttgaaagctttgaaagcagatttcaggagtgaaaccaaaattgtcgatgagatacgatacag |
17357307 |
T |
|
| Q |
226 |
caaaaggttgtgtgattgattctgattgagatgttgtg |
263 |
Q |
| |
|
|||| ||| |||||| | ||||||| | ||||||||| |
|
|
| T |
17357308 |
caaatggtggtgtgactaattctgactctgatgttgtg |
17357345 |
T |
|
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