View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21335_low_4 (Length: 327)
Name: NF21335_low_4
Description: NF21335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21335_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 22325278 - 22324967
Alignment:
| Q |
1 |
aatctatattgatgcacctaaacaaactattatggcccataagtttgctcttggttcaaagtcaagtgtttttaaccaaatgttcaaggaggattctgct |
100 |
Q |
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| T |
22325278 |
aatctatattgatgcatctaaacaaactattatggcccataagtatgctcttggttcaaagtcaagtgcttttaaccaaatgttcaaggaggattctgtt |
22325179 |
T |
|
| Q |
101 |
gatagtattatcatctcagatatgacaactataccatgtcaaatatttatagattacttctacgatatcgtgagagacgaggatcttctgaattatagtc |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22325178 |
gatagtattaccatctcagatatgacaactataccatgtcaaatatttatagattacttctacgatatcgtgagagacgaggatcttctgaattatagtc |
22325079 |
T |
|
| Q |
201 |
aagagttattagaagctgcaaagaaatatgatgtaattgatctgataaaggatattgagaaaaggctcataagagatatcactacacagaatgtagttga |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22325078 |
aagagttattagaagctgcaaagaaatatgatgtaattgatttgataaaggatattgagaaaaggctcataagagatatcactacacagaatgtagttga |
22324979 |
T |
|
| Q |
301 |
gaggatgaagat |
312 |
Q |
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|||||||||||| |
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| T |
22324978 |
gaggatgaagat |
22324967 |
T |
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