View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21335_low_5 (Length: 313)
Name: NF21335_low_5
Description: NF21335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21335_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 307
Target Start/End: Complemental strand, 249249 - 248960
Alignment:
| Q |
18 |
ctttctcatgcaatatacacatggttattatattcagtcacttttattttcttaaatcattactagtgtctatgtgtatgtgttagtgtttggcgtctat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
249249 |
ctttctcatgcaatatacacatggttattatattcagtcacttttattttcttaaatcattaccagtgtctatgtgtatgtgttagtgtttggcgtctat |
249150 |
T |
|
| Q |
118 |
gtctgaactttatatatagattataagcaaatgaatgaattgattatatatgtcaggtgttgacgttcatatagagtgcagatttagagcaagctcacca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
249149 |
gtctgaactttatatatagattataagcaaatgaatgaattgattatatatgtcaggtgttgacgttcatatagagtgcagatttagagcaagctcacca |
249050 |
T |
|
| Q |
218 |
agaaccaacgaacagataaatttctcagtgaacagaacaacagacagagagggagcatacaaattagatataccatcagtggatggaact |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
249049 |
agaaccaacgaacagataaatttctcagtgaacagaacaacagacagagagggagcatacaaattagatataccatcagtggatggaact |
248960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 94
Target Start/End: Complemental strand, 17105300 - 17105255
Alignment:
| Q |
49 |
attcagtcacttttattttcttaaatcattactagtgtctatgtgt |
94 |
Q |
| |
|
||||| |||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
17105300 |
attcaatcacttttattttcttaaattattattagtgtctatgtgt |
17105255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 94
Target Start/End: Original strand, 26473302 - 26473347
Alignment:
| Q |
49 |
attcagtcacttttattttcttaaatcattactagtgtctatgtgt |
94 |
Q |
| |
|
|||||| |||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
26473302 |
attcagacacttttattttcttaaactattacaagtgtctatgtgt |
26473347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 100
Target Start/End: Original strand, 28090409 - 28090460
Alignment:
| Q |
49 |
attcagtcacttttattttcttaaatcattactagtgtctatgtgtatgtgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| | ||||| ||||| |
|
|
| T |
28090409 |
attcagtcacttttattttcttaaattgttactagtgtgtgtgtgtgtgtgt |
28090460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University