View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21336_low_2 (Length: 321)

Name: NF21336_low_2
Description: NF21336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21336_low_2
NF21336_low_2
[»] chr2 (5 HSPs)
chr2 (17-255)||(31331934-31332172)
chr2 (17-255)||(31338663-31338902)
chr2 (17-243)||(30269057-30269290)
chr2 (153-255)||(30269249-30269359)
chr2 (58-134)||(31481970-31482044)
[»] chr8 (6 HSPs)
chr8 (17-255)||(25641010-25641247)
chr8 (25-176)||(27813867-27814017)
chr8 (87-172)||(4756122-4756207)
chr8 (158-205)||(4756144-4756191)
chr8 (74-128)||(4743905-4743959)
chr8 (162-196)||(39195518-39195552)
[»] chr3 (4 HSPs)
chr3 (17-255)||(7403913-7404150)
chr3 (162-242)||(36086983-36087064)
chr3 (66-181)||(36086937-36087052)
chr3 (66-110)||(16456650-16456694)
[»] chr7 (3 HSPs)
chr7 (17-215)||(4682951-4683149)
chr7 (87-196)||(1528124-1528233)
chr7 (162-250)||(1528119-1528207)
[»] chr4 (4 HSPs)
chr4 (17-243)||(53302383-53302616)
chr4 (158-255)||(53302663-53302768)
chr4 (150-196)||(53302572-53302618)
chr4 (153-201)||(47964938-47964986)
[»] chr6 (1 HSPs)
chr6 (25-255)||(30824964-30825193)
[»] chr5 (3 HSPs)
chr5 (17-253)||(7413024-7413259)
chr5 (25-253)||(37190419-37190646)
chr5 (19-249)||(5075968-5076197)
[»] chr1 (2 HSPs)
chr1 (74-161)||(47694191-47694278)
chr1 (162-252)||(47799533-47799623)


Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 31332172 - 31331934
Alignment:
Q  17 acaattctgttcattttgcagaatcgaaaaacatttttaagagcatagatgcaggagaatcacatttctgagattagagaagtaaataaaatttggttca 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31332172 acaattctgttcattttgcagaatcgaaaaacatttttaagagcatagatgcaggagaatcacatttctgagattagagaagtaaataaaatttggttca 31332073  T
Q  117 agcattttatcagacaaacattaagcactgtaccataaaggttgattgaagcattttatcaaacagaaaacaggcattgtgtcataaagtttggttgcag 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31332072 agcattttatcagacaaacattaagcactgtaccataaaggttgattgaagcattttatcaaacagaaaacaggcattgtgtcataaagtttggttgcag 31331973  T
Q  217 cactttatcaaacacaaatcaagcattctaccatgaagc 255  Q
    || ||||||||||||||| ||||||||||||||||||||    
T  31331972 cattttatcaaacacaaaacaagcattctaccatgaagc 31331934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 31338902 - 31338663
Alignment:
Q  17 acaattctgttcattttgcagaatcgaaaaacatttttaagagcatagatgcaggagaatcacatttctgagattagagaagtaaataaaatttggttca 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31338902 acaattctgttcattttgcagaatcgaaaaacatttttaagagcatagatgcaggagaatcacatttctgagattagagaagtaaataaaatttggttca 31338803  T
Q  117 agcattttatcagacaaacattaagcactgtaccat-aaaggttgattgaagcattttatcaaacagaaaacaggcattgtgtcataaagtttggttgca 215  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31338802 agcattttatcagacaaacattaagcactgtaccataaaaggttgattgaagcattttatcaaacagaaaacaggcattgtgtcataaagtttggttgca 31338703  T
Q  216 gcactttatcaaacacaaatcaagcattctaccatgaagc 255  Q
    ||| ||||||||||||||| ||||||||||||||||||||    
T  31338702 gcattttatcaaacacaaaacaagcattctaccatgaagc 31338663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 17 - 243
Target Start/End: Original strand, 30269057 - 30269290
Alignment:
Q  17 acaattctgttcattttgcagaatcgaaaaacatttttaagagcatagatgcaggagaatcacatttctgagattagagaagtaaataaaatttggttca 116  Q
    |||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30269057 acaaatctgttcattttgcaaaatcgaaaaacatttt-aagagcatagatgcaggagaatcacatttctgagattagagaagtaaataaaatttggttca 30269155  T
Q  117 agcattttatcagacaaacattaagcactgtaccataaaggttgattgaagcattttatcaaacagaaaaca--------ggcattgtgtcataaagttt 208  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||         ||||||||||| |||||||    
T  30269156 agcattttatcagacaaacattaagcattgtaccataaaggtagattgaagcattttatcaaacagaaaacaagcattgtagcattgtgtcaaaaagttt 30269255  T
Q  209 ggttgcagcactttatcaaacacaaatcaagcatt 243  Q
    | ||| |||| ||||||||||| ||| ||||||||    
T  30269256 gattgaagcattttatcaaacagaaaacaagcatt 30269290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 153 - 255
Target Start/End: Original strand, 30269249 - 30269359
Alignment:
Q  153 aaaggttgattgaagcattttatcaaacagaaaacaggcat--------tgtgtcataaagtttggttgcagcactttatcaaacacaaatcaagcattc 244  Q
    |||| ||||||||||||||||||||||||||||||| ||||        ||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  30269249 aaagtttgattgaagcattttatcaaacagaaaacaagcattgtagcattgtgtcataaagtttggttgcagcattttatcaaacacaaaacaagcattc 30269348  T
Q  245 taccatgaagc 255  Q
    ||| |||||||    
T  30269349 tacaatgaagc 30269359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 134
Target Start/End: Original strand, 31481970 - 31482044
Alignment:
Q  58 agcatagatgcaggagaatcacatttctgagattagagaagtaaataaaatttggttcaagcattttatcagacaaa 134  Q
    |||||||  |||| ||||||||||| ||||  ||||||||||||||||||||||| | ||||||||||||| |||||    
T  31481970 agcataggggcagaagaatcacattactga--ttagagaagtaaataaaatttggcttaagcattttatcaaacaaa 31482044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 255
Target Start/End: Original strand, 25641010 - 25641247
Alignment:
Q  17 acaattctgttcattttgcagaatcgaaaaacatttttaagagcatagatgcaggagaatcacatttctgagattagagaagtaaataaaatttggttca 116  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25641010 acaattctgttcattttgcagaatcgaaaaacatttt-aagagcatagatgcaggagaatcacatttctgagattagagaagtaaataaaatttggttca 25641108  T
Q  117 agcattttatcagacaaacattaagcactgtaccataaaggttgattgaagcattttatcaaacagaaaacaggcattgtgtcataaagtttggttgcag 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  25641109 agcattttatcagacaaacattaagcactgtaccataaaggttgattgaagcattttatcaaacagaaaacaggcattgtgtcataaagtttggttgcat 25641208  T
Q  217 cactttatcaaacacaaatcaagcattctaccatgaagc 255  Q
    || ||||||||||||||| ||||||||||||||||||||    
T  25641209 cattttatcaaacacaaaacaagcattctaccatgaagc 25641247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 25 - 176
Target Start/End: Original strand, 27813867 - 27814017
Alignment:
Q  25 gttcattttgcagaatcgaaaaacatttttaagagcatagatgcaggagaatcacatttctgagattagagaagtaaataaaatttggttcaagcatttt 124  Q
    |||| |||||||||||||||| ||||||  |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  27813867 gttcgttttgcagaatcgaaacacattta-aagagcatagatgcaggagaatcacattgctgagattagagaagtaaataaaatttggttcaagcatttt 27813965  T
Q  125 atcagacaaacattaagcactgtaccataaaggttgattgaagcattttatc 176  Q
    |||||||||| || ||||| ||||||||||||||||||||||||||||||||    
T  27813966 atcagacaaaaatcaagcattgtaccataaaggttgattgaagcattttatc 27814017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 172
Target Start/End: Original strand, 4756122 - 4756207
Alignment:
Q  87 agattagagaagtaaataaaatttggttcaagcattttatcagacaaacattaagcactgtaccataaaggttgattgaagcattt 172  Q
    ||||||||||||||||| ||||||| || ||||||||||||| ||| | |  ||||| |||||||||||| ||| || ||||||||    
T  4756122 agattagagaagtaaatcaaatttgattgaagcattttatcaaacagaaaacaagcattgtaccataaagattgtttaaagcattt 4756207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 205
Target Start/End: Original strand, 4756144 - 4756191
Alignment:
Q  158 ttgattgaagcattttatcaaacagaaaacaggcattgtgtcataaag 205  Q
    ||||||||||||||||||||||||||||||| |||||||  |||||||    
T  4756144 ttgattgaagcattttatcaaacagaaaacaagcattgtaccataaag 4756191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 128
Target Start/End: Original strand, 4743905 - 4743959
Alignment:
Q  74 aatcacatttctgagattagagaagtaaataaaatttggttcaagcattttatca 128  Q
    ||||||||| ||||||||||||||||||||| ||| ||||| |||||||| ||||    
T  4743905 aatcacattactgagattagagaagtaaatacaatctggttgaagcatttcatca 4743959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 196
Target Start/End: Original strand, 39195518 - 39195552
Alignment:
Q  162 ttgaagcattttatcaaacagaaaacaggcattgt 196  Q
    ||||||||||||||||||||||||||| |||||||    
T  39195518 ttgaagcattttatcaaacagaaaacaagcattgt 39195552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 7404150 - 7403913
Alignment:
Q  17 acaattctgttcattttgcagaatcgaaaaacatttttaagagcatagatgcaggagaatcacatttctgagattagagaagtaaataaaatttggttca 116  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  7404150 acaattctgttcattttgcagaatcgaaaaacatttt-aagagcatagatgcaggagaatcacatttctgagattagaggagtaaataatatttggttca 7404052  T
Q  117 agcattttatcagacaaacattaagcactgtaccataaaggttgattgaagcattttatcaaacagaaaacaggcattgtgtcataaagtttggttgcag 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7404051 agcattttatcagacaaacattaagcactgtaccataaaggttgattgaagcattttatcaaacagaaaacaggcattgtgtcataaagtttggttgcag 7403952  T
Q  217 cactttatcaaacacaaatcaagcattctaccatgaagc 255  Q
    || ||||||||||||||| ||||||||||||||||||||    
T  7403951 cattttatcaaacacaaaacaagcattctaccatgaagc 7403913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 162 - 242
Target Start/End: Original strand, 36086983 - 36087064
Alignment:
Q  162 ttgaagcattttatcaaacagaaaacaggcattgtgtcataaa-gtttggttgcagcactttatcaaacacaaatcaagcat 242  Q
    |||||||||||||||||||| |||||| | |||||  |||||| ||||||||| |||| ||||||||||||||| |||||||    
T  36086983 ttgaagcattttatcaaacataaaacatgaattgtaccataaaagtttggttgaagcattttatcaaacacaaagcaagcat 36087064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 66 - 181
Target Start/End: Original strand, 36086937 - 36087052
Alignment:
Q  66 tgcaggagaatcacatttctgagattagagaagtaaataaaatttggttcaagcattttatcagacaaacattaagcactgtaccat-aaaggttgattg 164  Q
    ||||| ||||||| ||| ||||||||||| ||||||| ||||||||||| ||||||||||||| ||| | |  | | | |||||||| |||| ||| |||    
T  36086937 tgcagaagaatcagattactgagattaga-aagtaaacaaaatttggttgaagcattttatcaaacataaaacatgaattgtaccataaaagtttggttg 36087035  T
Q  165 aagcattttatcaaaca 181  Q
    |||||||||||||||||    
T  36087036 aagcattttatcaaaca 36087052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 66 - 110
Target Start/End: Complemental strand, 16456694 - 16456650
Alignment:
Q  66 tgcaggagaatcacatttctgagattagagaagtaaataaaattt 110  Q
    ||||||||||||||||| || ||||||||||||||||||||||||    
T  16456694 tgcaggagaatcacattactaagattagagaagtaaataaaattt 16456650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 4683149 - 4682951
Alignment:
Q  17 acaattctgttcattttgcagaatcgaaaaacatttttaagagcatagatgcaggagaatcacatttctgagattagagaagtaaataaaatttggttca 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4683149 acaattctgttcattttgcagaatcgaaaaacatttttaagagcatagatgcaggagaatcacatttctgagattagagaagtaaataaaatttggttca 4683050  T
Q  117 agcattttatcagacaaacattaagcactgtaccataaaggttgattgaagcattttatcaaacagaaaacaggcattgtgtcataaagtttggttgca 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4683049 agcattttatcagacaaacattaagcactgtaccataaaggttgattgaagcattttatcaaacagaaaacaggcattgtgtcataaagtttggttgca 4682951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 196
Target Start/End: Complemental strand, 1528233 - 1528124
Alignment:
Q  87 agattagagaagtaaataaaatttggttcaagcattttatcagacaaacattaagcactgtaccataaaggttgattgaagcattttatcaaacagaaaa 186  Q
    |||||| ||||||||||||||||||||| ||||||||||||| | |   |  ||||| | |||||||||  ||| ||||||  |||||||||||| ||||    
T  1528233 agattaaagaagtaaataaaatttggttgaagcattttatcaaaaagtaagcaagcattctaccataaattttggttgaagttttttatcaaacaaaaaa 1528134  T
Q  187 caggcattgt 196  Q
    || |||||||    
T  1528133 caagcattgt 1528124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 250
Target Start/End: Complemental strand, 1528207 - 1528119
Alignment:
Q  162 ttgaagcattttatcaaacagaaaacaggcattgtgtcataaagtttggttgcagcactttatcaaacacaaatcaagcattctaccat 250  Q
    |||||||||||||||||| || || || ||||| |  |||||| |||||||| ||   ||||||||||| ||| |||||||| ||||||    
T  1528207 ttgaagcattttatcaaaaagtaagcaagcattctaccataaattttggttgaagttttttatcaaacaaaaaacaagcattgtaccat 1528119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 17 - 243
Target Start/End: Original strand, 53302383 - 53302616
Alignment:
Q  17 acaattctgttcattttgcagaatcgaaaaacatttttaagagcatagatgcaggagaatcacatttctgagattagagaagtaaataaaatttggttca 116  Q
    |||| ||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53302383 acaaatctgttcattttgcaaaatcaaaaaacatttt-aagagcatagatgcaggagaatcacatttctgagattagagaagtaaataaaatttggttca 53302481  T
Q  117 agcattttatcagacaaacattaagcactgtaccataaaggttgattgaagcattttatcaaacagaaaaca--------ggcattgtgtcataaagttt 208  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||| |    
T  53302482 agcattttatcagacaaacattaagcattgtaccataaaggttgattgaagcattttatcaaacagaaaacaagcattgtagcattgtgtcataaagtct 53302581  T
Q  209 ggttgcagcactttatcaaacacaaatcaagcatt 243  Q
    | ||| |||| ||||||||||| ||| ||||||||    
T  53302582 gattgaagcattttatcaaacagaaaacaagcatt 53302616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 158 - 255
Target Start/End: Original strand, 53302663 - 53302768
Alignment:
Q  158 ttgattgaagcattttatcaaacagaaaacaggcat--------tgtgtcataaagtttggttgcagcactttatcaaacacaaatcaagcattctacca 249  Q
    ||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||| || ||||||||||||||| |||||||||||| |    
T  53302663 ttgattgaagcattttatcaaacagaaaacaggcattgtagcattgtgtcataaagtttggttgcaacattttatcaaacacaaaacaagcattctacaa 53302762  T
Q  250 tgaagc 255  Q
    ||||||    
T  53302763 tgaagc 53302768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 196
Target Start/End: Original strand, 53302572 - 53302618
Alignment:
Q  150 cataaaggttgattgaagcattttatcaaacagaaaacaggcattgt 196  Q
    |||||||  |||||||||||||||||||||||||||||| |||||||    
T  53302572 cataaagtctgattgaagcattttatcaaacagaaaacaagcattgt 53302618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 201
Target Start/End: Original strand, 47964938 - 47964986
Alignment:
Q  153 aaaggttgattgaagcattttatcaaacagaaaacaggcattgtgtcat 201  Q
    |||| ||| ||||||||||||||||||||||||||| ||| ||| ||||    
T  47964938 aaagtttggttgaagcattttatcaaacagaaaacatgcagtgtatcat 47964986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 25 - 255
Target Start/End: Original strand, 30824964 - 30825193
Alignment:
Q  25 gttcattttgcagaatcgaaaaacatttttaagagcatagatgcaggagaatcacatttctgagattagagaagtaaataaaatttggttcaagcatttt 124  Q
    |||| ||||||| |||||||| ||||||  ||||||||||||||||||||||||||||  ||||||||||  ||||||||||||||||||||  |||||     
T  30824964 gttcgttttgcaaaatcgaaacacattta-aagagcatagatgcaggagaatcacattgatgagattagattagtaaataaaatttggttcactcatttg 30825062  T
Q  125 atcagacaaacattaagcactgtaccataaaggttgattgaagcattttatcaaacagaaaacaggcattgtgtcataaagtttggttgcagcactttat 224  Q
    |||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||| |||||    
T  30825063 atcagacaaaaatcaagcattgtaccataaaggttgattgaagcattttatcaaacagaatacaagcattgagtcataaagtttggttgcagcattttat 30825162  T
Q  225 caaacacaaatcaagcattctaccatgaagc 255  Q
    |||||||||| ||||||||||||||||||||    
T  30825163 caaacacaaaacaagcattctaccatgaagc 30825193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 133; Significance: 4e-69; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 17 - 253
Target Start/End: Original strand, 7413024 - 7413259
Alignment:
Q  17 acaattctgttcattttgcagaatcgaaaaacatttttaagagcatagatgcaggagaatcacatttctgagattagagaagtaaataaaatttggttca 116  Q
    ||||||| |||| ||||||||||| |||| ||||||  |||||||||||||| ||||||||||||| |  | ||| |||||||||| |||||||||||||    
T  7413024 acaattccgttcgttttgcagaattgaaacacattta-aagagcatagatgctggagaatcacattacaaatattcgagaagtaaaaaaaatttggttca 7413122  T
Q  117 agcattttatcagacaaacattaagcactgtaccataaaggttgattgaagcattttatcaaacagaaaacaggcattgtgtcataaagtttggttgcag 216  Q
    |||||||||||| ||||| || ||||| ||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||| |||| ||    
T  7413123 agcattttatcaaacaaaaatcaagcattgtaccataaaggttgattgaggcattttatcaaacacaaaacaagcattgtgtcataaagtttagttgaag 7413222  T
Q  217 cactttatcaaacacaaatcaagcattctaccatgaa 253  Q
    || |||||| |||||||| ||||||||||||||||||    
T  7413223 cattttatcgaacacaaaacaagcattctaccatgaa 7413259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 25 - 253
Target Start/End: Original strand, 37190419 - 37190646
Alignment:
Q  25 gttcattttgcagaatcgaaaaacatttttaagagcatagatgcaggagaatcacatttctgagattagagaagtaaataaaatttggttcaagcatttt 124  Q
    |||| ||||||||||| |||| ||||||  |||||||||||||| ||||||||||||| | || ||| |||||||||||||||||| |||||| ||||||    
T  37190419 gttcgttttgcagaattgaaacacattta-aagagcatagatgctggagaatcacattacagatattcgagaagtaaataaaatttagttcaaacatttt 37190517  T
Q  125 atcagacaaacattaagcactgtaccataaaggttgattgaagcattttatcaaacagaaaacaggcattgtgtcataaagtttggttgcagcactttat 224  Q
    |||| ||||| || ||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||| |||| |||||    
T  37190518 atcaaacaaaaatcaagcattgtaccataaaggttgattgaagcattttatcaaacacaaaacaagcattgtgtcataaagtttagttgaagcattttat 37190617  T
Q  225 caaacacaaatcaagcattctaccatgaa 253  Q
    | |||||||| ||||||||||||||||||    
T  37190618 cgaacacaaaacaagcattctaccatgaa 37190646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 5076197 - 5075968
Alignment:
Q  19 aattctgttcattttgcagaatcgaaaaacatttttaagagcatagatgcaggagaatcacatttctgagattagagaagtaaataaaatttggttcaag 118  Q
    |||||||||| ||||||||||| |||| ||||||  |||||||||||||| ||||||||||||| | ||  || ||||||||||||||||||||||||||    
T  5076197 aattctgttcgttttgcagaattgaaacacattta-aagagcatagatgctggagaatcacattacagatttttgagaagtaaataaaatttggttcaag 5076099  T
Q  119 cattttatcagacaaacattaagcactgtaccataaaggttgattgaagcattttatcaaacagaaaacaggcattgtgtcataaagtttggttgcagca 218  Q
    |||||||||| ||||| || ||||| ||||||||||||||||||||| ||||||||||||||| |||||| | | ||||||||||||||| |||| ||||    
T  5076098 cattttatcaaacaaaaatcaagcattgtaccataaaggttgattgaggcattttatcaaacacaaaacaagaactgtgtcataaagtttagttgaagca 5075999  T
Q  219 ctttatcaaacacaaatcaagcattctacca 249  Q
     |||||| |||||||| ||||||||||||||    
T  5075998 ttttatcgaacacaaaacaagcattctacca 5075968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 161
Target Start/End: Complemental strand, 47694278 - 47694191
Alignment:
Q  74 aatcacatttctgagattagagaagtaaataaaatttggttcaagcattttatcagacaaacattaagcactgtaccataaaggttga 161  Q
    ||||||||| | ||||||||||||||||||||||||||||  ||||||||||||| ||| | |  | ||| |||||||||||| ||||    
T  47694278 aatcacattacggagattagagaagtaaataaaatttggtcgaagcattttatcaaacacaaaagatgcattgtaccataaagtttga 47694191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 252
Target Start/End: Complemental strand, 47799623 - 47799533
Alignment:
Q  162 ttgaagcattttatcaaacagaaaacaggcattgtgtcataaagtttggttgcagcactttatcaaacacaaatcaagcattctaccatga 252  Q
    ||||||||||| |||||||||||| || |||||||   ||||| |||||||| |||| || |||||||| ||| |||| ||| ||||||||    
T  47799623 ttgaagcatttgatcaaacagaaagcaagcattgtacgataaattttggttgaagcatttgatcaaacataaaacaagaattgtaccatga 47799533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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