View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21336_low_3 (Length: 292)

Name: NF21336_low_3
Description: NF21336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21336_low_3
NF21336_low_3
[»] chr4 (8 HSPs)
chr4 (23-279)||(24153624-24153880)
chr4 (117-279)||(50723047-50723209)
chr4 (135-277)||(4377498-4377652)
chr4 (117-205)||(2815772-2815860)
chr4 (117-205)||(36248071-36248159)
chr4 (135-199)||(2158847-2158911)
chr4 (135-205)||(33518292-33518362)
chr4 (201-254)||(2815867-2815920)
[»] chr1 (11 HSPs)
chr1 (117-279)||(9539358-9539520)
chr1 (117-277)||(10780916-10781076)
chr1 (117-277)||(6226881-6227052)
chr1 (135-205)||(25031162-25031232)
chr1 (137-195)||(8065199-8065257)
chr1 (135-267)||(1016758-1016901)
chr1 (117-202)||(34912509-34912594)
chr1 (140-200)||(31738109-31738169)
chr1 (135-205)||(27464077-27464147)
chr1 (214-277)||(9477932-9477995)
chr1 (163-205)||(9477870-9477912)
[»] chr3 (12 HSPs)
chr3 (117-277)||(26285568-26285728)
chr3 (117-205)||(38573175-38573263)
chr3 (137-277)||(23778476-23778625)
chr3 (135-267)||(26903367-26903510)
chr3 (135-267)||(36617530-36617673)
chr3 (201-277)||(36477778-36477854)
chr3 (138-205)||(24310096-24310163)
chr3 (135-205)||(25032075-25032145)
chr3 (201-277)||(7728795-7728871)
chr3 (117-205)||(7856697-7856785)
chr3 (140-200)||(35502350-35502410)
chr3 (138-206)||(36475688-36475756)
[»] chr5 (5 HSPs)
chr5 (117-279)||(43144762-43144935)
chr5 (138-277)||(36745159-36745309)
chr5 (138-200)||(5569180-5569242)
chr5 (165-206)||(36633808-36633849)
chr5 (201-280)||(25819371-25819450)
[»] chr7 (15 HSPs)
chr7 (126-283)||(33941367-33941535)
chr7 (135-205)||(38300194-38300264)
chr7 (117-280)||(2945127-2945301)
chr7 (135-205)||(8256765-8256835)
chr7 (201-279)||(30074373-30074451)
chr7 (201-267)||(43265687-43265753)
chr7 (132-205)||(24658636-24658709)
chr7 (145-205)||(1247850-1247910)
chr7 (201-275)||(10702848-10702922)
chr7 (138-200)||(25233168-25233230)
chr7 (136-205)||(46090010-46090079)
chr7 (126-202)||(1691857-1691933)
chr7 (144-206)||(25617885-25617947)
chr7 (135-205)||(43265760-43265830)
chr7 (201-277)||(38293551-38293627)
[»] chr2 (8 HSPs)
chr2 (135-279)||(32033191-32033344)
chr2 (135-267)||(4075659-4075801)
chr2 (201-267)||(4075860-4075926)
chr2 (142-204)||(3356913-3356975)
chr2 (123-200)||(18703482-18703559)
chr2 (135-205)||(11562222-11562292)
chr2 (137-186)||(7700561-7700610)
chr2 (201-279)||(3356827-3356905)
[»] chr6 (6 HSPs)
chr6 (135-268)||(24901898-24902042)
chr6 (117-202)||(2919863-2919948)
chr6 (135-267)||(18817129-18817272)
chr6 (117-205)||(6689395-6689483)
chr6 (117-205)||(21883456-21883544)
chr6 (117-200)||(14607587-14607670)
[»] scaffold0535 (1 HSPs)
scaffold0535 (139-200)||(9895-9956)
[»] chr8 (8 HSPs)
chr8 (135-267)||(45485948-45486091)
chr8 (126-205)||(24556723-24556802)
chr8 (219-279)||(6802494-6802554)
chr8 (219-279)||(32161126-32161186)
chr8 (117-279)||(2148580-2148753)
chr8 (126-204)||(6802580-6802658)
chr8 (214-279)||(24556638-24556703)
chr8 (116-205)||(29866363-29866452)


Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 23 - 279
Target Start/End: Original strand, 24153624 - 24153880
Alignment:
Q  23 gtgcacttgtaaacacaaattaaaatggaaaacctgtaaacatgagaagttgttatttagagattcaaagtttgggaagtagaacactaaatgaaacatt 122  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  24153624 gtgcacttgtaaacacaaattaaaatggaaaaccagtaaacatgagaagttgttatttagagattcaaagtttgggaaatagaacactaaatgaaacatt 24153723  T
Q  123 tgtagtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaaagatttggaagcacttt 222  Q
    ||||||| ||| || |||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||||| |||||||||||||| ||||    
T  24153724 tgtagttgctaccgccaagagcaaagtcaacttcacatgcttataaactatagtaaatgtgttgcacttatttgtttccataaagatttggaagcccttt 24153823  T
Q  223 caactttgcaaattttggatcagattgaacatttttagcataattcataagttgatg 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24153824 caactttgcaaattttggatcagattgaacatttttagcataattcataagttgatg 24153880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 117 - 279
Target Start/End: Complemental strand, 50723209 - 50723047
Alignment:
Q  117 aacatttgtagtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaaagatttggaag 216  Q
    |||| ||| |||| ||| ||||||||| ||||||||||||| | | | |||||| | | |||||||||||||||||||||||| ||||||||| |  |||    
T  50723209 aacacttgcagttgctaccggcaagagtaaagtcaacttcaaaagttaataaaccacagcaaatgtgttgcatttatttgttttcacaaagatcttaaag 50723110  T
Q  217 cactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatg 279  Q
      |||||||||| ||||||||||| ||| ||||||||||| || |||||| | ||||||||||    
T  50723109 tcctttcaacttagcaaattttgggtcaaattgaacatttgtaacataatacttaagttgatg 50723047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 135 - 277
Target Start/End: Original strand, 4377498 - 4377652
Alignment:
Q  135 cggcaagagcaaagtcaacttcacatgcttataaact-ataacaaatgtgttgcatttatttgtttc-----------cacaaagatttggaagcacttt 222  Q
    ||||||||||||||||||||||| | | ||||||| | ||| ||||||||||||| |||||||||||           ||||||||| || |||| ||||    
T  4377498 cggcaagagcaaagtcaacttcaaaagtttataaaatcatagcaaatgtgttgcacttatttgtttccacaagtcatgcacaaagatctgaaagcccttt 4377597  T
Q  223 caactttgcaaattttggatcagattgaacatttttagcataattcataagttga 277  Q
    |||||| ||||||||||| |||||| |||||| | || |||||||| ||||||||    
T  4377598 caacttggcaaattttgggtcagatcgaacatctgtaacataattcttaagttga 4377652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 117 - 205
Target Start/End: Original strand, 2815772 - 2815860
Alignment:
Q  117 aacatttgtagtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa 205  Q
    |||| ||| |||| ||| |||||||||||||| |||||| | | | |||||||| ||| ||||||||||||| ||||||||||||||||    
T  2815772 aacacttgcagttgctaccggcaagagcaaagccaacttgaaaagtttataaaccatagcaaatgtgttgcacttatttgtttccacaa 2815860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 117 - 205
Target Start/End: Original strand, 36248071 - 36248159
Alignment:
Q  117 aacatttgtagtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa 205  Q
    |||| ||| |||| ||| |||||||||||||| |||||||| | | |||||||  |||||||| |||||||| ||||||||||||||||    
T  36248071 aacacttgcagttgctaccggcaagagcaaagccaacttcaaaagtttataaatcataacaaaagtgttgcacttatttgtttccacaa 36248159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 199
Target Start/End: Original strand, 2158847 - 2158911
Alignment:
Q  135 cggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgttt 199  Q
    |||||||||||||  |||||||| | ||||| |||| ||| ||||||||||||| ||||||||||    
T  2158847 cggcaagagcaaaaccaacttcaaaagcttacaaaccatagcaaatgtgttgcacttatttgttt 2158911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 205
Target Start/End: Original strand, 33518292 - 33518362
Alignment:
Q  135 cggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa 205  Q
    ||||||||| |||| |||||| | | | |||||||| |  |||||||||||||| ||||||||||||||||    
T  33518292 cggcaagagtaaagccaactttaaaagtttataaaccacgacaaatgtgttgcacttatttgtttccacaa 33518362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 254
Target Start/End: Original strand, 2815867 - 2815920
Alignment:
Q  201 cacaaagatttggaagcactttcaactttgcaaattttggatcagattgaacat 254  Q
    ||||||||| || |||| |||||||||| ||||||||||| |||||| ||||||    
T  2815867 cacaaagatctgaaagccctttcaacttagcaaattttgggtcagatcgaacat 2815920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 117 - 279
Target Start/End: Complemental strand, 9539520 - 9539358
Alignment:
Q  117 aacatttgtagtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaaagatttggaag 216  Q
    |||| ||| |||| |||||||||||||||||  |||||||| | | |||||||| | ||||||||||||||| |||||||||||||||||||| ||||||    
T  9539520 aacacttgcagttgctatcggcaagagcaaaaccaacttcaaaagtttataaaccaaaacaaatgtgttgcacttatttgtttccacaaagatctggaag 9539421  T
Q  217 cactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatg 279  Q
    | | |||||||| |||||||||||||||||| |||||||| || |||||||| ||||||||||    
T  9539420 ccccttcaacttagcaaattttggatcagatcgaacatttgtaacataattcttaagttgatg 9539358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 117 - 277
Target Start/End: Complemental strand, 10781076 - 10780916
Alignment:
Q  117 aacatttgtagtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaaagatttggaag 216  Q
    |||| ||| |||| ||| |||||||||||||  |||||||| | | ||||||||||||  |||||||||||| |||||||||||||||||||| || |||    
T  10781076 aacacttgcagttgctaccggcaagagcaaaaccaacttcaaaagtttataaactatagtaaatgtgttgcacttatttgtttccacaaagatctgaaag 10780977  T
Q  217 cactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttga 277  Q
      |||||||||| ||||||||| | |||||| |||||| | || |||||||  ||||||||    
T  10780976 tcctttcaacttagcaaattttaggtcagatcgaacatatgtaacataattattaagttga 10780916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 117 - 277
Target Start/End: Original strand, 6226881 - 6227052
Alignment:
Q  117 aacatttgtagtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttc-----------cacaa 205  Q
    |||| ||| |||| ||||||||||||||||||||||||||| | | |||||||| ||| ||||||||||||| |||||||||||           |||||    
T  6226881 aacacttgcagttgctatcggcaagagcaaagtcaacttcaaaagtttataaaccatagcaaatgtgttgcacttatttgtttccacaagttttgcacaa 6226980  T
Q  206 agatttggaagcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttga 277  Q
    |||| || |||| ||| ||||||  ||| |||||| |||||| ||||||||||| |||||||| ||||||||    
T  6226981 agatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttttaacataattcttaagttga 6227052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 135 - 205
Target Start/End: Original strand, 25031162 - 25031232
Alignment:
Q  135 cggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa 205  Q
    ||||||||||||||||||||||| | | |||||||| ||| ||||||||||||||||||||||||||||||    
T  25031162 cggcaagagcaaagtcaacttcaaaagtttataaaccatagcaaatgtgttgcatttatttgtttccacaa 25031232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 195
Target Start/End: Original strand, 8065199 - 8065257
Alignment:
Q  137 gcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttattt 195  Q
    |||||||||||| |||||||| | | |||||||| ||||||||||||||||||||||||    
T  8065199 gcaagagcaaagccaacttcaaaagtttataaaccataacaaatgtgttgcatttattt 8065257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 267
Target Start/End: Complemental strand, 1016901 - 1016758
Alignment:
Q  135 cggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa-----------agatttggaagcactttc 223  Q
    |||||||||||||| |||||||| | ||||| |||| | | ||||||| ||||| ||||||||||||||||           ||||  | |||| |||||    
T  1016901 cggcaagagcaaagccaacttcaaaagcttaaaaaccaaagcaaatgtcttgcacttatttgtttccacaagtattgcacaaagatccgaaagccctttc 1016802  T
Q  224 aactttgcaaattttggatcagattgaacatttttagcataatt 267  Q
    ||||||| ||||||||||||||||| ||||||| || |||||||    
T  1016801 aactttgaaaattttggatcagatttaacatttctaacataatt 1016758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 202
Target Start/End: Original strand, 34912509 - 34912594
Alignment:
Q  117 aacatttgtagtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttcca 202  Q
    |||| ||| |||| |||||||||||  ||||| |||||||| | ||||||||||||||   ||||||||||| |||||||||||||    
T  34912509 aacacttgcagttactatcggcaaggacaaagccaacttcaaaagcttataaactatagtgaatgtgttgcacttatttgtttcca 34912594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 140 - 200
Target Start/End: Original strand, 31738109 - 31738169
Alignment:
Q  140 agagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttc 200  Q
    |||||||||||||||| | |  ||||||||  |||||||||||||||||||||||||||||    
T  31738109 agagcaaagtcaactttaaaaacttataaatcataacaaatgtgttgcatttatttgtttc 31738169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 205
Target Start/End: Complemental strand, 27464147 - 27464077
Alignment:
Q  135 cggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa 205  Q
    |||| ||| ||||| |||||||| | |||||||||  ||||||||||| ||||| ||||||||||||||||    
T  27464147 cggctagaacaaagccaacttcaaaagcttataaatcataacaaatgtattgcacttatttgtttccacaa 27464077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 277
Target Start/End: Original strand, 9477932 - 9477995
Alignment:
Q  214 aagcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttga 277  Q
    |||| |||||||||| ||||||||||| | |||| |||||||| || |||||||| ||||||||    
T  9477932 aagccctttcaacttagcaaattttgggttagatcgaacatttgtaccataattcttaagttga 9477995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 205
Target Start/End: Original strand, 9477870 - 9477912
Alignment:
Q  163 ttataaactataacaaatgtgttgcatttatttgtttccacaa 205  Q
    |||||||| ||| ||||||||||||| ||||||||||||||||    
T  9477870 ttataaaccatagcaaatgtgttgcacttatttgtttccacaa 9477912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 117 - 277
Target Start/End: Complemental strand, 26285728 - 26285568
Alignment:
Q  117 aacatttgtagtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaaagatttggaag 216  Q
    |||| |||||||| ||| ||| ||||||||||||||||||| | |||||||||| |||| |||| ||||||| |||||||||||||||| ||| || |||    
T  26285728 aacacttgtagttgctaacggaaagagcaaagtcaacttcaaaagcttataaaccataataaatttgttgcacttatttgtttccacaacgatctgaaag 26285629  T
Q  217 cactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttga 277  Q
    | |||||||||| | ||||||| | |||||| ||| |||| || |||||||  ||||||||    
T  26285628 ccctttcaacttagtaaatttttggtcagatcgaaaatttgtaacataattattaagttga 26285568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 117 - 205
Target Start/End: Original strand, 38573175 - 38573263
Alignment:
Q  117 aacatttgtagtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa 205  Q
    |||| ||| |||| |||||||||||||||||| |||||||| | | |||||||| ||| ||||||||||||| ||||||||||||||||    
T  38573175 aacacttgcagttgctatcggcaagagcaaagccaacttcaaaagtttataaacaatagcaaatgtgttgcacttatttgtttccacaa 38573263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 137 - 277
Target Start/End: Original strand, 23778476 - 23778625
Alignment:
Q  137 gcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttc---------cacaaagatttggaagcactttcaact 227  Q
    |||||||||||| |||||||| | | |||||||| ||| |||||||||||||||||||||||||         ||||||||| |  |||| |||||||||    
T  23778476 gcaagagcaaagccaacttcaaaagtttataaaccatagcaaatgtgttgcatttatttgtttccacaagtttcacaaagatcttaaagccctttcaact 23778575  T
Q  228 ttgcaaattttggatcagattgaacatttttagcataattcataagttga 277  Q
    |  |||||||||| |||||| ||||||||  | |||||||| ||||||||    
T  23778576 taacaaattttgggtcagatcgaacatttgcaacataattcttaagttga 23778625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 135 - 267
Target Start/End: Original strand, 26903367 - 26903510
Alignment:
Q  135 cggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa-----------agatttggaagcactttc 223  Q
    |||||||||||||| |||||||| | ||||| |||| | | ||||||| ||||| ||||||||||||||||           ||||  | |||| |||||    
T  26903367 cggcaagagcaaagccaacttcaaaagcttaaaaaccaaagcaaatgtcttgcacttatttgtttccacaagtattgcacaaagatccgaaagccctttc 26903466  T
Q  224 aactttgcaaattttggatcagattgaacatttttagcataatt 267  Q
    ||||||||||||||||||||||||| ||||||| || |||||||    
T  26903467 aactttgcaaattttggatcagatttaacatttctaacataatt 26903510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 135 - 267
Target Start/End: Complemental strand, 36617673 - 36617530
Alignment:
Q  135 cggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa-----------agatttggaagcactttc 223  Q
    |||||||||||||| |||||||| | ||||| |||| | | ||||||| ||||| ||||||||||||||||           ||||  | |||| |||||    
T  36617673 cggcaagagcaaagccaacttcaaaagcttaaaaaccaaagcaaatgtcttgcacttatttgtttccacaagtattgcacaaagatccgaaagccctttc 36617574  T
Q  224 aactttgcaaattttggatcagattgaacatttttagcataatt 267  Q
    ||||||||||||||||||||||||| ||||||| || |||||||    
T  36617573 aactttgcaaattttggatcagatttaacatttctaacataatt 36617530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 201 - 277
Target Start/End: Complemental strand, 36477854 - 36477778
Alignment:
Q  201 cacaaagatttggaagcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttga 277  Q
    ||||||||| || |||| |||||||||| ||||||||||| |||||| |||||||| || |||||||| ||||||||    
T  36477854 cacaaagatatgaaagccctttcaacttagcaaattttgggtcagatcgaacatttgtaacataattcttaagttga 36477778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 205
Target Start/End: Original strand, 24310096 - 24310163
Alignment:
Q  138 caagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa 205  Q
    |||||||||||||||||||| | | |||||||| ||| ||||||||| ||| ||||||||||||||||    
T  24310096 caagagcaaagtcaacttcaaaagtttataaaccatagcaaatgtgtcgcacttatttgtttccacaa 24310163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 205
Target Start/End: Complemental strand, 25032145 - 25032075
Alignment:
Q  135 cggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa 205  Q
    |||||||||||||  |||||||| | | | |||||| |||| |||||||||||||||||||||||||||||    
T  25032145 cggcaagagcaaaaccaacttcaaaagttaataaaccataataaatgtgttgcatttatttgtttccacaa 25032075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 277
Target Start/End: Complemental strand, 7728871 - 7728795
Alignment:
Q  201 cacaaagatttggaagcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttga 277  Q
    ||||||||| || || | |||||||||| ||||||||||| ||||||  ||||||| || |||||||| ||||||||    
T  7728871 cacaaagatctgaaaaccctttcaacttagcaaattttgggtcagatataacatttgtaacataattcttaagttga 7728795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 205
Target Start/End: Original strand, 7856697 - 7856785
Alignment:
Q  117 aacatttgtagtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa 205  Q
    |||| ||| |||| ||| |||||| ||||||| |||||||| | | |||||||| |||  ||| |||||||| ||||||||||||||||    
T  7856697 aacacttgcagttgctaccggcaaaagcaaagccaacttcaaaagtttataaaccataggaaacgtgttgcacttatttgtttccacaa 7856785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 200
Target Start/End: Complemental strand, 35502410 - 35502350
Alignment:
Q  140 agagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttc 200  Q
    |||||||| ||||||||| | |||||||||  |||||||||| |||||| |||||||||||    
T  35502410 agagcaaaatcaacttcaaaagcttataaatcataacaaatgggttgcacttatttgtttc 35502350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 206
Target Start/End: Original strand, 36475688 - 36475756
Alignment:
Q  138 caagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaaa 206  Q
    |||||| |||| |||||| | | |||| ||||  ||||||||||||||||| || ||||||||||||||    
T  36475688 caagagaaaagccaacttaaaaggcttctaaatcataacaaatgtgttgcacttgtttgtttccacaaa 36475756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 117 - 279
Target Start/End: Original strand, 43144762 - 43144935
Alignment:
Q  117 aacatttgtagtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttc-----------cacaa 205  Q
    |||| ||| |||| ||| ||||||||||||||||||||||| | | |||||||| ||| |||||||||| ||||||||||||||           |||||    
T  43144762 aacacttgcagttgctaccggcaagagcaaagtcaacttcaaaagtttataaaccatagcaaatgtgttacatttatttgtttccacaagttttgcacaa 43144861  T
Q  206 agatttggaagcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatg 279  Q
    ||||||| || | |||||||||| ||||||||| | |||||| |||||||| ||  ||||||| ||||||||||    
T  43144862 agatttgaaaactctttcaacttagcaaattttcggtcagatcgaacatttgtaatataattcttaagttgatg 43144935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 138 - 277
Target Start/End: Original strand, 36745159 - 36745309
Alignment:
Q  138 caagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttg-----------tttccacaaagatttggaagcactttcaac 226  Q
    |||||||||||||||||||| | | |||||||| ||| ||||||||||||| |||| ||           ||| ||||||||| || |||| ||||||||    
T  36745159 caagagcaaagtcaacttcaaaagtttataaaccatatcaaatgtgttgcacttatatgttttcataatttttgcacaaagatctgaaagccctttcaac 36745258  T
Q  227 tttgcaaattttggatcagattgaacatttttagcataattcataagttga 277  Q
    || ||||| ||||| |||||| |||||||| || |||||||| ||||||||    
T  36745259 ttagcaaactttgggtcagatcgaacatttgtaacataattcttaagttga 36745309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 5569180 - 5569242
Alignment:
Q  138 caagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttc 200  Q
    |||||||||||||||||||| | ||| |||||  ||||||||||||||||| |||||| ||||    
T  5569180 caagagcaaagtcaacttcaaaagctaataaatcataacaaatgtgttgcacttatttatttc 5569242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 36633849 - 36633808
Alignment:
Q  165 ataaactataacaaatgtgttgcatttatttgtttccacaaa 206  Q
    |||||| ||| |||||||||||||||||||||||||||||||    
T  36633849 ataaaccatagcaaatgtgttgcatttatttgtttccacaaa 36633808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 280
Target Start/End: Original strand, 25819371 - 25819450
Alignment:
Q  201 cacaaagatttggaagcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatga 280  Q
    ||||||||||||||  | |||| ||||| ||||||||||||||||||| |||||||  | ||| |||  |||||||||||    
T  25819371 cacaaagatttggattcccttttaacttagcaaattttggatcagatttaacatttacaacattatttctaagttgatga 25819450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 126 - 283
Target Start/End: Complemental strand, 33941535 - 33941367
Alignment:
Q  126 agtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa-----------agatttgga 214  Q
    |||| ||| |||||||||||||  |||||||| | | |||||| | ||| ||||||||||||| ||||||||||||||||           |||| || |    
T  33941535 agttgctaccggcaagagcaaatccaacttcaaaagtttataatccatagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaa 33941436  T
Q  215 agcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatgatgt 283  Q
    ||| |||||||||| ||||||||||| |||||| |||||||| || |||||||| |||||||| |||||    
T  33941435 agccctttcaacttagcaaattttgggtcagatcgaacatttataacataattcttaagttgacgatgt 33941367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 135 - 205
Target Start/End: Complemental strand, 38300264 - 38300194
Alignment:
Q  135 cggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa 205  Q
    ||||||||||||||||||||||| | | |||||||| ||| ||||||||||||| ||||||||||||||||    
T  38300264 cggcaagagcaaagtcaacttcaaaagtttataaaccatagcaaatgtgttgcacttatttgtttccacaa 38300194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 117 - 280
Target Start/End: Complemental strand, 2945301 - 2945127
Alignment:
Q  117 aacatttgtagtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttcc-----------acaa 205  Q
    |||| ||| |||| ||| || |||||||||||||||||||| | | |||||||  ||| ||||||||||||||||||||| ||||           ||||    
T  2945301 aacacttgcagttgctaccgacaagagcaaagtcaacttcaaaagtttataaatcatagcaaatgtgttgcatttatttgcttccacaagttttgtacaa 2945202  T
Q  206 agatttggaagcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatga 280  Q
    |||| || |||| |||||||||| ||||||||| | |||||| |||||||| ||  ||||||| |||||||||||    
T  2945201 agatctgaaagccctttcaacttagcaaattttcggtcagatcgaacatttgtaatataattcttaagttgatga 2945127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 205
Target Start/End: Original strand, 8256765 - 8256835
Alignment:
Q  135 cggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa 205  Q
    ||||||||||||| ||||||||| | |||||||||| ||| |||||||| |||| |||||| |||||||||    
T  8256765 cggcaagagcaaaatcaacttcaaaagcttataaacaatagcaaatgtgctgcacttatttatttccacaa 8256835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 30074451 - 30074373
Alignment:
Q  201 cacaaagatttggaagcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatg 279  Q
    |||||||||||| |||| |||||||||| ||||||||| | |||||| |||||||| ||  ||||||| ||||||||||    
T  30074451 cacaaagatttgaaagccctttcaacttagcaaattttcgttcagatcgaacatttgtaatataattcttaagttgatg 30074373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 201 - 267
Target Start/End: Complemental strand, 43265753 - 43265687
Alignment:
Q  201 cacaaagatttggaagcactttcaactttgcaaattttggatcagattgaacatttttagcataatt 267  Q
    |||||||||  | |||| |||||||||||||||||||||||||||||| ||||||| || |||||||    
T  43265753 cacaaagatccgaaagccctttcaactttgcaaattttggatcagatttaacatttctaacataatt 43265687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 205
Target Start/End: Original strand, 24658636 - 24658709
Alignment:
Q  132 tatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa 205  Q
    ||||||||||||||||  |||||||| | | |||||||  ||| ||||||||||||| ||||||||||||||||    
T  24658636 tatcggcaagagcaaaaccaacttcaaaagtttataaatcatagcaaatgtgttgcacttatttgtttccacaa 24658709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 1247910 - 1247850
Alignment:
Q  145 aaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa 205  Q
    ||||||||||||| | |||||||||  ||| ||||||||||||| ||||||||||||||||    
T  1247910 aaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttccacaa 1247850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 275
Target Start/End: Original strand, 10702848 - 10702922
Alignment:
Q  201 cacaaagatttggaagcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagtt 275  Q
    ||||||||| || ||||  ||||||||| ||||||||||| |||||| |||||||| || |||||||| ||||||    
T  10702848 cacaaagatctgaaagccttttcaacttagcaaattttgggtcagatagaacatttgtaacataattcttaagtt 10702922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 25233168 - 25233230
Alignment:
Q  138 caagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttc 200  Q
    ||||||||||| ||| |||| | |||||||||  ||||||||||||||||| |||||||||||    
T  25233168 caagagcaaagccaatttcaaaagcttataaatcataacaaatgtgttgcacttatttgtttc 25233230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 205
Target Start/End: Complemental strand, 46090079 - 46090010
Alignment:
Q  136 ggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa 205  Q
    ||||||||||||| | |||||  | |||||||||| ||| ||||||||||||| |||||||||| |||||    
T  46090079 ggcaagagcaaagccgacttccaaagcttataaaccatagcaaatgtgttgcacttatttgttttcacaa 46090010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 202
Target Start/End: Original strand, 1691857 - 1691933
Alignment:
Q  126 agtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttcca 202  Q
    |||| |||| |||| |||||||  |||||||| | | |||||||| ||| ||||||||||||| |||||||||||||    
T  1691857 agttgctattggcatgagcaaaaccaacttcaaaagtttataaaccatagcaaatgtgttgcacttatttgtttcca 1691933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 206
Target Start/End: Original strand, 25617885 - 25617947
Alignment:
Q  144 caaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaaa 206  Q
    |||| ||||||||| | |||||||||  ||| |||||||||| |||||||||||||| |||||    
T  25617885 caaaatcaacttcaaaagcttataaatcatagcaaatgtgttacatttatttgtttcaacaaa 25617947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 205
Target Start/End: Complemental strand, 43265830 - 43265760
Alignment:
Q  135 cggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa 205  Q
    |||||||||||||| |||||||| | ||||| |||| | | ||| ||| ||||| ||||||||||||||||    
T  43265830 cggcaagagcaaagccaacttcaaaagcttaaaaaccaaagcaagtgtcttgcacttatttgtttccacaa 43265760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 277
Target Start/End: Complemental strand, 38293627 - 38293551
Alignment:
Q  201 cacaaagatttggaagcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttga 277  Q
    |||||| || || |||| ||| ||||||  ||| |||||| ||||||||||||||| || |||||||| ||||||||    
T  38293627 cacaaaaatctgaaagcccttacaacttaacaacttttgggtcagattgaacatttgtaacataattcttaagttga 38293551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 135 - 279
Target Start/End: Original strand, 32033191 - 32033344
Alignment:
Q  135 cggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttcca---------caaagatttggaagcactttcaa 225  Q
    |||||||||||||  |||||||| | | |||||||  ||| |||||||||||||||||||||||||||         |||||| ||  |||| |||||||    
T  32033191 cggcaagagcaaaaccaacttcaaaagtttataaatcatagcaaatgtgttgcatttatttgtttccacaagttttgcaaagacttctaagccctttcaa 32033290  T
Q  226 ctttgcaaattttggatcagattgaacatttttagcataattcataagttgatg 279  Q
    ||| ||||||||||| || ||| |||||||| || |||||||| ||||||||||    
T  32033291 cttagcaaattttgggtcggatcgaacatttataacataattcttaagttgatg 32033344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 135 - 267
Target Start/End: Original strand, 4075659 - 4075801
Alignment:
Q  135 cggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaaagattt----------ggaagcactttca 224  Q
    |||||||||||||| |||||||| | ||||| |||| | | ||||||| ||||| ||||||||||||||||  |||           |||||| ||||||    
T  4075659 cggcaagagcaaagccaacttcaaaagcttaaaaaccaaagcaaatgtcttgcacttatttgtttccacaagtattgcacaaagatcggaagccctttca 4075758  T
Q  225 actttgcaaattttggatcagattgaacatttttagcataatt 267  Q
    |||||||||||||||||||||||| ||||||| || |||||||    
T  4075759 actttgcaaattttggatcagatttaacatttctaacataatt 4075801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 201 - 267
Target Start/End: Original strand, 4075860 - 4075926
Alignment:
Q  201 cacaaagatttggaagcactttcaactttgcaaattttggatcagattgaacatttttagcataatt 267  Q
    |||||||||| | |||| |||||||||||||||||||||||||||||| ||||||| || |||||||    
T  4075860 cacaaagattcgaaagccctttcaactttgcaaattttggatcagatttaacatttctaacataatt 4075926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 204
Target Start/End: Complemental strand, 3356975 - 3356913
Alignment:
Q  142 agcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccaca 204  Q
    |||||||||||||||| | | |||||||  ||| |||||||||||||||||||||||||||||    
T  3356975 agcaaagtcaacttcaaaagtttataaatcatagcaaatgtgttgcatttatttgtttccaca 3356913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 200
Target Start/End: Complemental strand, 18703559 - 18703482
Alignment:
Q  123 tgtagtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttc 200  Q
    ||||||| |||| ||||||||||||| |||||||| | |||||||||| ||| ||||| |||| || |||||||||||    
T  18703559 tgtagttgctataggcaagagcaaagccaacttcaaaagcttataaaccatatcaaatatgtttcacttatttgtttc 18703482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 205
Target Start/End: Original strand, 11562222 - 11562292
Alignment:
Q  135 cggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa 205  Q
    ||||||||| |||| ||||||||   | | |||||||||| ||||| ||||||||||||||||||||||||    
T  11562222 cggcaagagtaaagccaacttcaatagttaataaactatagcaaatatgttgcatttatttgtttccacaa 11562292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 186
Target Start/End: Original strand, 7700561 - 7700610
Alignment:
Q  137 gcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttg 186  Q
    ||||||||||||||||| ||| | |||||||||| |||||||||||||||    
T  7700561 gcaagagcaaagtcaacgtcaaaagcttataaaccataacaaatgtgttg 7700610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 3356905 - 3356827
Alignment:
Q  201 cacaaagatttggaagcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatg 279  Q
    ||||||||| || |||| ||||||||||  |||||||| | ||||||  ||||||| ||  ||||||||||||||||||    
T  3356905 cacaaagatatgaaagccctttcaacttaacaaattttcggtcagatcaaacatttataatataattcataagttgatg 3356827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 135 - 268
Target Start/End: Original strand, 24901898 - 24902042
Alignment:
Q  135 cggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa-----------agatttggaagcactttc 223  Q
    |||||||||||||| |||||||| | ||||| |||| | | ||||||| ||||| ||||||||||||||||           ||||  | |||| |||||    
T  24901898 cggcaagagcaaagccaacttcaaaagcttaaaaaccaaagcaaatgtcttgcacttatttgtttccacaagtattgcacaaagatccgaaagccctttc 24901997  T
Q  224 aactttgcaaattttggatcagattgaacatttttagcataattc 268  Q
    ||||||||||||||||||||||||| ||||||| || ||||||||    
T  24901998 aactttgcaaattttggatcagatttaacatttctaacataattc 24902042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 117 - 202
Target Start/End: Complemental strand, 2919948 - 2919863
Alignment:
Q  117 aacatttgtagtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttcca 202  Q
    |||| ||| |||| ||| |||||||||||||  |||||||| | | | |||||| |||||||||||||||||||||||||||||||    
T  2919948 aacacttgcagttgctaccggcaagagcaaaaccaacttcaaaagttaataaaccataacaaatgtgttgcatttatttgtttcca 2919863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 135 - 267
Target Start/End: Original strand, 18817129 - 18817272
Alignment:
Q  135 cggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa-----------agatttggaagcactttc 223  Q
    |||||||||||||| |||||||| | ||||| |||| | | ||||||| ||||| ||||||||||||||||           ||||  | |||| |||||    
T  18817129 cggcaagagcaaagccaacttcaaaagcttaaaaaccaaagcaaatgtcttgcacttatttgtttccacaagtattgcacaaagatccgaaagccctttc 18817228  T
Q  224 aactttgcaaattttggatcagattgaacatttttagcataatt 267  Q
    ||||||||||||||||||||||||| ||||||| || |||||||    
T  18817229 aactttgcaaattttggatcagatttaacatttctaacataatt 18817272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 117 - 205
Target Start/End: Original strand, 6689395 - 6689483
Alignment:
Q  117 aacatttgtagtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa 205  Q
    |||| ||| |||| ||| ||||||||||||||||||||||| | |||||||||  ||| ||||||||||| | |||||||||| |||||    
T  6689395 aacacttgcagttgctaccggcaagagcaaagtcaacttcaaaagcttataaatcatagcaaatgtgttgtacttatttgttttcacaa 6689483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 117 - 205
Target Start/End: Original strand, 21883456 - 21883544
Alignment:
Q  117 aacatttgtagtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa 205  Q
    |||| ||| |||| ||| |||||||||||||| |||||||| | | |||||||| ||| ||||||||||| | ||||||||||||||||    
T  21883456 aacacttgcagttgctaccggcaagagcaaagccaacttcaaaagtttataaaccatagcaaatgtgttgtacttatttgtttccacaa 21883544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 200
Target Start/End: Complemental strand, 14607670 - 14607587
Alignment:
Q  117 aacatttgtagtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttc 200  Q
    |||| ||| |||| ||| || |||||||||||||||||||| | | |||||||| |||||  |||||||||| |||||||||||    
T  14607670 aacacttgcagttgctaccgtcaagagcaaagtcaacttcaaaagtttataaaccataacttatgtgttgcacttatttgtttc 14607587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0535 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0535
Description:

Target: scaffold0535; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 139 - 200
Target Start/End: Original strand, 9895 - 9956
Alignment:
Q  139 aagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttc 200  Q
    ||||||||||||||||||| |  |||||||| |||||||||||||||||| |||||||||||    
T  9895 aagagcaaagtcaacttcaaaatcttataaaatataacaaatgtgttgcacttatttgtttc 9956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 135 - 267
Target Start/End: Complemental strand, 45486091 - 45485948
Alignment:
Q  135 cggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa-----------agatttggaagcactttc 223  Q
    |||||||||||||| |||||||| | ||||| |||| | | ||||||| ||||| ||||||||||||||||           ||||  | |||| |||||    
T  45486091 cggcaagagcaaagccaacttcaaaagcttaaaaaccaaagcaaatgtcttgcacttatttgtttccacaagtattgcacaaagatccgaaagccctttc 45485992  T
Q  224 aactttgcaaattttggatcagattgaacatttttagcataatt 267  Q
    ||||||||||||||||||||||||| ||||||| || |||||||    
T  45485991 aactttgcaaattttggatcagatttaacatttctaacataatt 45485948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 205
Target Start/End: Complemental strand, 24556802 - 24556723
Alignment:
Q  126 agtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa 205  Q
    |||| ||| ||| |||||||||| |||||||| |  ||||||||| ||||||||||||||||| |||||||||| |||||    
T  24556802 agttgctaccggtaagagcaaagccaacttcaaaatcttataaaccataacaaatgtgttgcacttatttgttttcacaa 24556723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 219 - 279
Target Start/End: Complemental strand, 6802554 - 6802494
Alignment:
Q  219 ctttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatg 279  Q
    ||||| |||| ||||||||||| ||||||||||||||| || |||||||| ||||||||||    
T  6802554 ctttcgacttggcaaattttgggtcagattgaacatttataacataattcctaagttgatg 6802494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 219 - 279
Target Start/End: Complemental strand, 32161186 - 32161126
Alignment:
Q  219 ctttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatg 279  Q
    ||||||| || ||||||||||| ||||||||||||||| || |||||||| ||||||||||    
T  32161186 ctttcaatttagcaaattttgggtcagattgaacatttgtaacataattcttaagttgatg 32161126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 279
Target Start/End: Original strand, 2148580 - 2148753
Alignment:
Q  117 aacatttgtagtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa----------- 205  Q
    |||||||| |||| ||| || ||||||||||| || ||||| | |||||||||  |||  |||||||||||| |||||||||| |||||               
T  2148580 aacatttgcagttgctaccgacaagagcaaagccagcttcaaaagcttataaatcatagaaaatgtgttgcacttatttgttttcacaagttttgcacaa 2148679  T
Q  206 agatttggaagcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatg 279  Q
    |||| || |||| ||||  |||||||||||||||| ||||||| ||||||| || ||||||||  |||||||||    
T  2148680 agatctgaaagccctttacactttgcaaattttgggtcagatttaacatttataacataattctgaagttgatg 2148753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 204
Target Start/End: Complemental strand, 6802658 - 6802580
Alignment:
Q  126 agtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccaca 204  Q
    |||| ||| |||| ||||||||  |||||||| | |||||||||  ||  ||||||||||||||||| |||||||||||    
T  6802658 agttgctaccggcgagagcaaaaccaacttcaaaagcttataaagcatttcaaatgtgttgcatttaattgtttccaca 6802580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 279
Target Start/End: Complemental strand, 24556703 - 24556638
Alignment:
Q  214 aagcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatg 279  Q
    |||| |||||||||| |||||| |||  ||||||||||||||| || |||||||| ||| ||||||    
T  24556703 aagccctttcaacttagcaaatcttgagtcagattgaacatttataacataattcctaacttgatg 24556638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 205
Target Start/End: Original strand, 29866363 - 29866452
Alignment:
Q  116 aaacatttgtagtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa 205  Q
    ||||| ||| |||| ||| |||||||| ||| ||||| |||| | | ||| |||  ||| |||||||||||| |||||||||||||||||    
T  29866363 aaacacttgcagttgctaccggcaagaacaaggtcaagttcaaaagtttagaaatcatagcaaatgtgttgcgtttatttgtttccacaa 29866452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University