View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21336_low_4 (Length: 204)
Name: NF21336_low_4
Description: NF21336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21336_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 139; Significance: 6e-73; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 6232652 - 6232828
Alignment:
| Q |
18 |
aattcttctccaaccccaattcgaatcgtcaacattaacatatctgactcattccatgcgg---gttctccggtaatcatctccacgacggcgcaaccaa |
114 |
Q |
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| T |
6232652 |
aattcttctccaacaccaattcgaatcgtcaacatcaacatatctgattcattccatgcggcgggttctccggtaatcatctccacgacggcgcaaccaa |
6232751 |
T |
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| Q |
115 |
gagcccatatatcggctggcgattcataaacactatcattcactgcttctggtgacataatcatcggagttcatctc |
191 |
Q |
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| T |
6232752 |
gagcccatatatcggctgacgattcatacacactatcattcactgcttctggtgacataatcatcggagttcctctc |
6232828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 92 - 173
Target Start/End: Original strand, 6221953 - 6222034
Alignment:
| Q |
92 |
catctccacgacggcgcaaccaagagcccatatatcggctggcgattcataaacactatcattcactgcttctggtgacata |
173 |
Q |
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||||||||| | ||||||||||||||||||||||| || || |||||||||||||| || ||||| ||||||||||||||| |
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| T |
6221953 |
catctccacaatagcgcaaccaagagcccatatatctgccggtgattcataaacactctcgttcaccgcttctggtgacata |
6222034 |
T |
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