View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21337_high_3 (Length: 203)
Name: NF21337_high_3
Description: NF21337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21337_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 125; Significance: 1e-64; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 59 - 187
Target Start/End: Original strand, 39679972 - 39680100
Alignment:
| Q |
59 |
tggtgttataaaacatatgtcacctgatttggagaaattaaggaagttggttactcagtcaaaaactttgcaagataagatgacagcaagagatagtgct |
158 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
39679972 |
tggtgttataaaacatatgtcacctgatttggagaaattaaggaagttggttactcagtcaaaaactttgcaagataagatgaccgcaagagatagtgct |
39680071 |
T |
|
| Q |
159 |
acttggtctaaagttatgaatcaagaaga |
187 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
39680072 |
acttggtctaaagttatgaatcaagaaga |
39680100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 39679976 - 39679914
Alignment:
| Q |
1 |
caccagccaaaacagaaactttccatgcctttttaaggtcatgtggtttcttataaggtggtg |
63 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39679976 |
caccagccaaaacagaaactttccatgcctttttaaggtcatgtggtttcttataaggtggtg |
39679914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 185
Target Start/End: Original strand, 38052570 - 38052644
Alignment:
| Q |
111 |
actcagtcaaaaactttgcaagataagatgacagcaagagatagtgctacttggtctaaagttatgaatcaagaa |
185 |
Q |
| |
|
||||| ||||| ||||||||| ||||||||||||| | ||||||||| |||||||| ||||| ||||| |||||| |
|
|
| T |
38052570 |
actcaatcaaagactttgcaacataagatgacagctaaagatagtgcaacttggtccaaagtaatgaaccaagaa |
38052644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 38052519 - 38052460
Alignment:
| Q |
4 |
cagccaaaacagaaactttccatgcctttttaaggtcatgtggtttcttataaggtggtg |
63 |
Q |
| |
|
||||||| |||||||||||||| |||||||| | ||||| ||||| ||||||||||||| |
|
|
| T |
38052519 |
cagccaacacagaaactttccaagcctttttcaaatcatgaggttttttataaggtggtg |
38052460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University