View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21338_high_17 (Length: 240)
Name: NF21338_high_17
Description: NF21338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21338_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 40453952 - 40454173
Alignment:
| Q |
1 |
tgtgtataagcaagtttttcattgtatagtatagacaatggacttgagtgtttcttttgaatgaattgtgttgcaggttgtggtgttgagggtttctctg |
100 |
Q |
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| T |
40453952 |
tgtgtataagcaagtttttcattgtatagtatagacaatggacttgagtgtttcttttgaatgaattgtgttgcaggttgtggtgttgagggtttctctg |
40454051 |
T |
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| Q |
101 |
cattgtaaaggttgtgaagggaaggtcaggaaacatctctccagaatgcaaggtatgcaaatcatagcctctttcttgaaaaccagtaattaaaattcat |
200 |
Q |
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| T |
40454052 |
cattgtaaaggttgtgaagggaaggtcaggaaacatctctccagaatgcaaggtatgcaaatcatagcctctttcttgaaaaccagtaattaaaattcat |
40454151 |
T |
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| Q |
201 |
gttaatcatccacctagctatt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
40454152 |
gttaatcatccacctagctatt |
40454173 |
T |
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Target: chr2 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 55 - 151
Target Start/End: Original strand, 28229317 - 28229414
Alignment:
| Q |
55 |
ttttgaatgaattgtgttgcaggttgtggtgttgagggtttctctgcattgtaaaggttgtgaa-gggaaggtcaggaaacatctctccagaatgcaa |
151 |
Q |
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| T |
28229317 |
ttttgaatgaattttgttgcaggttgtggtgttgagggtttctctgcattgtaaaagttgtgaaggggaaggtcaggaaacatctctccagaatgcaa |
28229414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 28229243 - 28229294
Alignment:
| Q |
1 |
tgtgtataagcaagtttttcattgtatagtatagacaatggacttgagtgtt |
52 |
Q |
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| T |
28229243 |
tgtgtataagcaactttttcattgtatagtctagacaatggacttgagtgtt |
28229294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 155
Target Start/End: Original strand, 29145551 - 29145633
Alignment:
| Q |
73 |
gcaggttgtggtgttgagggtttctctgcattgtaaaggttgtgaagggaaggtcaggaaacatctctccagaatgcaaggta |
155 |
Q |
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| T |
29145551 |
gcaggttgtggtattgagggtttctttgcattgcaaagggtgtgaagggaagctgaggaaacacatctctaaaatgcaaggta |
29145633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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