View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21338_high_3 (Length: 578)
Name: NF21338_high_3
Description: NF21338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21338_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 5 - 564
Target Start/End: Complemental strand, 34947423 - 34946881
Alignment:
| Q |
5 |
ttcagactttagatttgatctgttgatattgacttaaggctttggagtatgaacattttaaaatctcatattcgattcatctctatattaattttagtag |
104 |
Q |
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| T |
34947423 |
ttcagactttagatttgatctgttggtattgacttaaagctttggagtatgaacattttaaaatctcatagtcgattcatctccatattaattttagtag |
34947324 |
T |
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| Q |
105 |
gacaatttaacttctttnnnnnnnnnnnnnnnnnnngagttaggagcgattttcttcctatgtgagataagattggcatttatagcacgtgccaaagtct |
204 |
Q |
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| T |
34947323 |
gacaatttaacttctttaaaaaaa------------gagttaggagcgattttctttctatgtgagataagattggcatttatagcacgtgccaa-gtct |
34947237 |
T |
|
| Q |
205 |
atgatattttgagattgatatgacacattgccttaaaattcgtccaagcttcataagacataccttaaatgttttcaccactagctagcaataagacaca |
304 |
Q |
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| T |
34947236 |
atgatattttgagattgatatgacacattgccttaaaattcgtccaagcttcataagacataccttaaatgttttcgccactagctagcaataagacaca |
34947137 |
T |
|
| Q |
305 |
cataaatttcctgcatatttacatactgtgataaaagttttcacaacttgctagcaatacacacacatatataatagtaacagttgaaaggaatttatta |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
34947136 |
cataaatttcctgcatatttacatactgtgataaaagttttcacaacttgctagcaatacacacacata----atagtaacagttgaaaggaatttatta |
34947041 |
T |
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| Q |
405 |
acttatttacattcacatgagagagcaagcatgaacattatcatcattaaacatgttactaacttggtcatctccacgttgagtaacatgaatggttcca |
504 |
Q |
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| T |
34947040 |
acttatttacattcacatgagagagcaagcatgaacattatcatcattaaacatgttactaacttggtcatctccacgttgagtaacatgaatggttcca |
34946941 |
T |
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| Q |
505 |
tgcctatcagggagattgtaaccatgtctatagtaattgtaactttctttgaactcattg |
564 |
Q |
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| T |
34946940 |
tgcctatcagggagattgtaaccatgtctatagtaattgtaactttctttgaactcattg |
34946881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 23942573 - 23942525
Alignment:
| Q |
72 |
atattcgattcatctctatattaattttagtaggacaatttaacttctt |
120 |
Q |
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| T |
23942573 |
atattcgattctcctctatatcaattttagtaggttaatttaacttctt |
23942525 |
T |
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