View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21338_high_5 (Length: 501)
Name: NF21338_high_5
Description: NF21338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21338_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 9 - 482
Target Start/End: Complemental strand, 44347976 - 44347517
Alignment:
| Q |
9 |
gacatcatcacgtggcttgacaagcacgccaacaatgatgcctatgaatctacacatccaattgagaattgtaaccatgacattgagacattgacaccag |
108 |
Q |
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||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44347976 |
gacatcatcacatggcttgacaagcacgccaacaatgatg---------------atccaattgagaattgtaaccatgacattgagacattgacaccag |
44347892 |
T |
|
| Q |
109 |
ttgtatcatcagcaaagactatgaaacaatctcataggcgaaaaagttatctttgtgggttgaaaggaagtcgttcgttacaccactcggcaaattagaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44347891 |
ttgtatcatcagcaaagactatgaaacaatctcataggcgaaaaagttatctttgtgggttgaaaggaagtcgttcgttacaccactcggcaaattagaa |
44347792 |
T |
|
| Q |
209 |
tgaaataattacactccggttgtgactgtgaccgtgaatgtaggtccatgatgtagctat-atattgttttactgtggacatctttcacattctgcctaa |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
44347791 |
tgaaataattacactccggttgtgactgtgaccgtgaatgtaggtccatgatgtagctataatattgttttactgtggacatctttcacattctgcctaa |
44347692 |
T |
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| Q |
308 |
tttcactgtgttatttactttccaacttgttttttaactccttgcaacaataagtcaatagtagattgttaggcatgtttaagatcttggagacaaaagt |
407 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44347691 |
tttcactgtattatttactttccaacttgttttttaactccttgcaacaataagtcaatagtagattgttaggcatgtttaagatcttggagacaaaagt |
44347592 |
T |
|
| Q |
408 |
tatcctataagaacttctctaccaaatattttgtgggtaatacgtattgttgaggaagtgatatcgtataatcaa |
482 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
44347591 |
tatcctacaagaacttctctaccaaatattttgtgggtaatacgtattgttgaggaagtgataccgtataatcaa |
44347517 |
T |
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