View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21338_low_1 (Length: 850)
Name: NF21338_low_1
Description: NF21338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21338_low_1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 792; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 792; E-Value: 0
Query Start/End: Original strand, 18 - 845
Target Start/End: Complemental strand, 2795184 - 2794357
Alignment:
| Q |
18 |
caagagctttcataggcgcaacataaacaattttataagcactatggtcaattgaaccatcaccaggatttctatgccgtgcaatctcttgaagtatggt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2795184 |
caagagctttcataggcgcaacataaacaattttataagcactatggtcaattgaaccatcaccaggatttctatgccgtgcaatctcttgaagtatggt |
2795085 |
T |
|
| Q |
118 |
aagaacagcaacattggtttttccagcaccagttgtagcacaaagtaaaagattatccgatttaaacagagcagtctcgtataccttgctctgcactcta |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2795084 |
aagaacagcaacattggtttttccagcaccagttggagcacaaagtaaaagattatccgatttaaacagagcagtctcatataccttgctctgcactcta |
2794985 |
T |
|
| Q |
218 |
ttcaattgtatcattcctttgaaggctggttgtgcccaatccggcatataaccaatattcacaagtttctcattaggatcaatgggtttagccttcaagg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2794984 |
ttcaattgtatcattcctttgaaggctggttgtgcccaatccggcatataaccaatattcacaagtttctcattaggatcaatgggtttagccttcaagg |
2794885 |
T |
|
| Q |
318 |
caggcacatgaatttcttgataaccttttctcggaagcctgtaagacccatcaggaagatcacattttccctttgtcataaacaaaccaccttgttcaaa |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2794884 |
caggcacatgaatttcttgataaccttttctcggaagcctgtaagacccatcaggaagatcacattttccctttgtcataaacaaaccaccttgttcaaa |
2794785 |
T |
|
| Q |
418 |
agcaaggttatccaaatcaagtatccggcattgacccccattttccccaactccatcaccagttcccctatcaatgtccatgtccccgtctttcaacctt |
517 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2794784 |
agcaaggttatccaaatcaagcatccggcgttgacccccattttccccaactccatcaccagttcccctatcaatgtccatgtccccgtctttcaacctt |
2794685 |
T |
|
| Q |
518 |
cgagcctcgtaccttatactcttctccaagttcttctccctctctatagtagaggctttcacaacatataactcctccaaaattgactccaaattcgacc |
617 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
2794684 |
cgagcctcgtaccttatactcttctccaagttcttctccctctctatagtagaggctttcacagcatataactcctccaaaattgactccaaattcgacc |
2794585 |
T |
|
| Q |
618 |
ccttcatctcttcctcaattttatccctctcttcttgatccctcgccctggccaagctagtacaccacacaatcttcaacttattctgcatcagaaactt |
717 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
2794584 |
ccttcatctcttcctcaattttatccctctcttcttgatccctcgccctggccaagctagtacaccacacaatcttcaacttattctgcattagaaactt |
2794485 |
T |
|
| Q |
718 |
aacaagactaaacttattcaaatcaaaataccccagcaacctcttctccacttctcggtcatcagcctcacccaaaaccttcaacacctcttcagcaagc |
817 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2794484 |
aacaagactaaacttattcaaatcaaaataccccaacaacctcttctccacttctctgtcatcagcctcacccaaaaccttcaacacctcttcagcaagc |
2794385 |
T |
|
| Q |
818 |
cttcgacaattttctggatcaatctctg |
845 |
Q |
| |
|
|||||||||||||| ||||||||||||| |
|
|
| T |
2794384 |
cttcgacaattttccggatcaatctctg |
2794357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 162; Significance: 5e-86; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 18 - 438
Target Start/End: Complemental strand, 29262697 - 29262277
Alignment:
| Q |
18 |
caagagctttcataggcgcaacataaacaattttataagcactatggtcaattgaaccatcaccaggatttctatgccgtgcaatctcttgaagtatggt |
117 |
Q |
| |
|
||||||||||||| || |||||||| ||||||||||| ||||| |||||||| ||||||||| | | ||| |||||||| ||||||| |||||| || || |
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|
| T |
29262697 |
caagagctttcattggtgcaacatatacaattttatatgcactgtggtcaatagaaccatcatcggtattcctatgccgcgcaatctgttgaaggatagt |
29262598 |
T |
|
| Q |
118 |
aagaacagcaacattggtttttccagcaccagttgtagcacaaagtaaaagattatccgatttaaacagagcagtctcgtataccttgctctgcactcta |
217 |
Q |
| |
|
||||||||||||||| |||||||||||||| || | |||||||| || | |||||| | ||| || |||||||| || || ||||||||||| |||||| |
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|
| T |
29262597 |
aagaacagcaacattcgtttttccagcaccggtaggggcacaaagcaacaaattatcaggtttgaagagagcagtttcataaaccttgctctgaactcta |
29262498 |
T |
|
| Q |
218 |
ttcaattgtatcattcctttgaaggctggttgtgcccaatccggcatataaccaatattcacaagtttctcattaggatcaatgggtttagccttcaagg |
317 |
Q |
| |
|
||||| ||| ||||||||||||| || |||||||||||||| ||||| ||| |||| ||| |||||||||||||||| ||||||||||||||| | |
|
|
| T |
29262497 |
ttcaactgtgtcattcctttgaaagccggttgtgcccaatcaggcatggcggaaatcttcaaaagcttctcattaggatcaaggggtttagccttcaatg |
29262398 |
T |
|
| Q |
318 |
caggcacatgaatttcttgataaccttttctcg-gaagcctgtaagacccatcaggaagatcacattttccctttgtcataaacaaaccaccttgttcaa |
416 |
Q |
| |
|
| || |||||||| |||| |||||||||| ||| || |||| ||||||||||||||||| ||||||||| ||||| |||||| || ||||||||||||| |
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|
| T |
29262397 |
ctggaacatgaatctcttcataacctttt-tcgagatgcctataagacccatcaggaaggtcacattttttctttgccataaataacccaccttgttcaa |
29262299 |
T |
|
| Q |
417 |
aagcaaggttatccaaatcaag |
438 |
Q |
| |
|
||| |||||||| |||||||| |
|
|
| T |
29262298 |
aagtgaggttatctaaatcaag |
29262277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 203 - 264
Target Start/End: Original strand, 29189686 - 29189747
Alignment:
| Q |
203 |
ttgctctgcactctattcaattgtatcattcctttgaaggctggttgtgcccaatccggcat |
264 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||| ||||||||||||||||| ||||| |
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|
| T |
29189686 |
ttgctctgcactctattcaggtgagtcattcctttgaaagctggttgtgcccaatcaggcat |
29189747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 618 - 734
Target Start/End: Complemental strand, 29262049 - 29261933
Alignment:
| Q |
618 |
ccttcatctcttcctcaattttatccctctcttcttgatccctcgccctggccaagctagtacaccacacaatcttcaacttattctgcatcagaaactt |
717 |
Q |
| |
|
||||||||||||||||||| | || |||||||| ||||| ||||| ||||| | ||||||||||| ||| |||| | |||| ||| || |||||| |
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|
| T |
29262049 |
ccttcatctcttcctcaatcgtctctctctcttcctgatcttgtgccctcgccaaacgagtacaccacaaaattttcagcctatttcgcaacaaaaactt |
29261950 |
T |
|
| Q |
718 |
aacaagactaaacttat |
734 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
29261949 |
aataagactaaacttat |
29261933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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