View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21338_low_10 (Length: 401)
Name: NF21338_low_10
Description: NF21338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21338_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 40453823 - 40453425
Alignment:
| Q |
1 |
ttctttttgttatcatcaaccttagttaaacccaaaacaggttcataatctaatacaccatccaaagaaactgtgtcaccaagcaaatatcttgatgaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40453823 |
ttctttttgttatcatcaaccttagttaaacccaaaacaggttcataatctaatacaccatccaaagaaactgtgtcaccaagcaaatatcttgatgaag |
40453724 |
T |
|
| Q |
101 |
taggaggagtgattaaatcagaagctggcttaacccaactccttcttaaaatactatcaaccggttttgaagagtaattgtttgcaatatgttcagtcac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40453723 |
taggaggagtgattaaatcagaagctggcttaacccaactccttcttaaaatactatcaaccggttttgaagagtaattgtttgcaatatgttcagtcac |
40453624 |
T |
|
| Q |
201 |
tttttctgttgtagtagtacttttcttcttctgatcatgagtactctttgttgcatttttctttttcttatcgctaagctttgaagtagtgtttttcttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40453623 |
tttttctgttgtagtagtacttttcttcttctgatcatgagtactctttgttgcatttttctttttcttatcgctaagctttgaagtagtgtttttcttg |
40453524 |
T |
|
| Q |
301 |
gccttttcatggacatgtttagggttgatgggtaaaggagaaggtgaactaggagcagtgacagtgagatctcttgctggagttctttttggatctgtg |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40453523 |
gccttttcatggacatgtttagggttgatgggtaaaggagaaggtgaactaggagcagtgacagtgagatctcttgctggagttctttttggatctgtg |
40453425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 12 - 175
Target Start/End: Complemental strand, 31252532 - 31252370
Alignment:
| Q |
12 |
atcatcaaccttagttaaacccaaaacaggttcataatctaa-tacaccatccaaagaaactgtgtcaccaagcaaatatcttgatgaagtaggaggagt |
110 |
Q |
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|||||||| ||||||||||||||||||| | |||| ||||| | |||||||| ||||| | |||||||||||||||||||| | || |||| ||||| |
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| T |
31252532 |
atcatcaatcttagttaaacccaaaacaaggtcattgtctaaattcaccatccgaagaatttatgtcaccaagcaaatatcttaacgacttaggtggagt |
31252433 |
T |
|
| Q |
111 |
gattaaatcagaagctg-gcttaacccaactccttcttaaaatactatcaaccggttttgaagagt |
175 |
Q |
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||| || ||||||| || || |||||||||| ||||| |||||||||| ||||||||||||| |
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| T |
31252432 |
gatgaagtcagaaggtgacctaaacccaactc---cttaagatactatcaattggttttgaagagt |
31252370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 43 - 118
Target Start/End: Complemental strand, 31286474 - 31286398
Alignment:
| Q |
43 |
tcataatctaa-tacaccatccaaagaaactgtgtcaccaagcaaatatcttgatgaagtaggaggagtgattaaat |
118 |
Q |
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| T |
31286474 |
tcataatctaagtataccatccaaagaaattgcgtcaccaagcaaatattttgatgatgcaagagaagtgattaaat |
31286398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 399
Target Start/End: Complemental strand, 31252282 - 31252246
Alignment:
| Q |
363 |
agtgagatctcttgctggagttctttttggatctgtg |
399 |
Q |
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| T |
31252282 |
agtgagatctcttgagggagttctttttggatctgtg |
31252246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 307
Target Start/End: Original strand, 20008124 - 20008263
Alignment:
| Q |
165 |
ttttgaagagtaattgtttgcaatatgttcagtcactttttctgttgtagtagtacttttcttcttctgatcatgagtactctttgttgcatttttcttt |
264 |
Q |
| |
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|||||||||||||||||||||||| |||| ||| | |||||||| ||||||| |||||||| || || || | ||| ||| ||||| ||||| ||| |
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| T |
20008124 |
ttttgaagagtaattgtttgcaatttgtttagtaagtttttctgatgtagta---cttttctttttatggacacgggtagccttggttgcttttttattt |
20008220 |
T |
|
| Q |
265 |
ttcttatcgctaagctttgaagtagtgtttttcttggcctttt |
307 |
Q |
| |
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||||||| | ||| |||| ||||| ||||||||||||||| |
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| T |
20008221 |
ttcttattatttagcaatgaaatagtgattttcttggcctttt |
20008263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 197
Target Start/End: Complemental strand, 24973587 - 24973555
Alignment:
| Q |
165 |
ttttgaagagtaattgtttgcaatatgttcagt |
197 |
Q |
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|||||||||||||||||||||||| |||||||| |
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| T |
24973587 |
ttttgaagagtaattgtttgcaatttgttcagt |
24973555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 28229089 - 28229060
Alignment:
| Q |
1 |
ttctttttgttatcatcaaccttagttaaa |
30 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
28229089 |
ttctttttgttatcatcaaccttagttaaa |
28229060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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