View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21338_low_11 (Length: 362)

Name: NF21338_low_11
Description: NF21338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21338_low_11
NF21338_low_11
[»] chr5 (2 HSPs)
chr5 (23-361)||(19284610-19284948)
chr5 (66-287)||(10191142-10191366)
[»] chr4 (1 HSPs)
chr4 (43-90)||(12351309-12351356)
[»] scaffold0150 (1 HSPs)
scaffold0150 (43-91)||(13033-13081)
[»] chr8 (1 HSPs)
chr8 (43-85)||(27801532-27801574)
[»] chr7 (3 HSPs)
chr7 (114-287)||(4539215-4539390)
chr7 (27-85)||(12598923-12598981)
chr7 (23-91)||(18321271-18321339)
[»] scaffold1559 (1 HSPs)
scaffold1559 (45-85)||(61-101)
[»] scaffold0118 (1 HSPs)
scaffold0118 (52-96)||(12093-12137)
[»] chr3 (1 HSPs)
chr3 (282-326)||(12089821-12089865)


Alignment Details
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 23 - 361
Target Start/End: Complemental strand, 19284948 - 19284610
Alignment:
Q  23 ttgttgcacgtaagaatcatagagaagaggagagaaaatgagacaaaccctagctaaggagaattgaacaaaaatttgcatttttcagagcattcgaggt 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19284948 ttgttgcacgtaagaatcatagagaagaggagagaaaatgagacaaaccctagctaaggagaattgaacaaaaatttgcatttttcagagcattcgaggt 19284849  T
Q  123 aaggggataatcccatcatcttagggtatctttattccaattgtgaggttgtttaatcttgtgaatttagatgtttttataatgagaatcatggtgagag 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19284848 aaggggataatcccatcatcttagggtatctttattccaattgtgaggttgtttaatcttgtgaatttagatgtttttataatgagaatcatggtgagag 19284749  T
Q  223 aatgatgatgaacaaatgttgatgagggttaatgttgttgaaagattagaattgagaaaaccaaagttagggtatttgaattgagaacttaaccatgaaa 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  19284748 aatgatgatgaacaaatgttgatgagggttaatgttgttgaaagattagaattgagaaagccaaagttagggtatttgaattgagaacttaaccatgaaa 19284649  T
Q  323 agagcggataattaaataggataagaggaaattaaactc 361  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  19284648 agagcggataattaaataggaaaagaggaaattaaactc 19284610  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 287
Target Start/End: Complemental strand, 10191366 - 10191142
Alignment:
Q  66 caaaccctagctaaggagaattgaa-caaaaatttgcatttttcagagcattcgaggtaagggg-ataatcccatcatcttagggtatctttattccaat 163  Q
    |||||||||||||||||||| |||| | |||| ||| | || || ||| ||||| ||||||||| | |||||  | |||||||| | |||| |||  |||    
T  10191366 caaaccctagctaaggagaagtgaaaccaaaagttg-agttctcggagaattcgtggtaagggggagaatcctttaatcttaggatgtcttaattgtaat 10191268  T
Q  164 tgtgaggttgtttaatcttgtgaatttagatgtttttataatgagaatcatggtgagagaatgatgatgaacaaatgttgatgagggttaatgttg---t 260  Q
     ||| ||||||||||||||  ||||||  ||||| |||| |||| ||| ||| ||  ||||||||||| |||| ||| | || | |||||||||||   |    
T  10191267 ggtggggttgtttaatcttaagaatttgaatgttgttatgatgaaaattatgatggaagaatgatgataaacatatg-taataaaggttaatgttgttat 10191169  T
Q  261 tgaaagattagaattgagaaaaccaaa 287  Q
    |||||||||||||||||  ||||||||    
T  10191168 tgaaagattagaattgaagaaaccaaa 10191142  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 90
Target Start/End: Original strand, 12351309 - 12351356
Alignment:
Q  43 agagaagaggagagaaaatgagacaaaccctagctaaggagaattgaa 90  Q
    |||||||||||||||||| ||| ||||||||| |||||||||||||||    
T  12351309 agagaagaggagagaaaaggaggcaaaccctaactaaggagaattgaa 12351356  T

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Target: scaffold0150 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 13033 - 13081
Alignment:
Q  43 agagaagaggagagaaaatgagacaaaccctagctaaggagaattgaac 91  Q
    ||||||||||||| |||| ||| |||||||||| |||||||||||||||    
T  13033 agagaagaggagacaaaaggaggcaaaccctagttaaggagaattgaac 13081  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 85
Target Start/End: Original strand, 27801532 - 27801574
Alignment:
Q  43 agagaagaggagagaaaatgagacaaaccctagctaaggagaa 85  Q
    |||||||||||||| ||| ||||||||||||||||| ||||||    
T  27801532 agagaagaggagaggaaaggagacaaaccctagctatggagaa 27801574  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 287
Target Start/End: Original strand, 4539215 - 4539390
Alignment:
Q  114 attcgaggtaaggggataatcccatcatcttagggtatctttattccaattgtgaggttgtttaatcttgtgaatttagatgtttttataatgagaatca 213  Q
    ||||||| |||||||| ||||   |||||||||||| |||| |||  ||| ||| | ||||||||||||  |||  ||  |||| || | |||| ||| |    
T  4539215 attcgagataaggggagaatcatttcatcttagggtttcttaattgtaatagtgggattgtttaatcttaagaacctaattgttgttgtgatgaaaatta 4539314  T
Q  214 tggtgagagaatgatgatgaacaaatgttgatgagggttaa---tgttgttgaaagattagaattgagaaaaccaaa 287  Q
    || ||| |||||||||||||||||||| | || | |||| |   |||||||||||||||||||||||  ||||||||    
T  4539315 tgatgaaagaatgatgatgaacaaatg-taataaaggttgatgttgttgttgaaagattagaattgaagaaaccaaa 4539390  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 85
Target Start/End: Complemental strand, 12598981 - 12598923
Alignment:
Q  27 tgcacgtaagaatcatagagaagaggagagaaaatgagacaaaccctagctaaggagaa 85  Q
    ||||||| ||||||| |||||||| ||||||| | ||| | ||||||||||||||||||    
T  12598981 tgcacgttagaatcagagagaagaagagagaataggaggctaaccctagctaaggagaa 12598923  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 18321271 - 18321339
Alignment:
Q  23 ttgttgcacgtaagaatcatagagaagaggagagaaaatgagacaaaccctagctaaggagaattgaac 91  Q
    ||||||||| | ||||||| || ||||||| ||| ||| ||| ||||| |||||||||||| |||||||    
T  18321271 ttgttgcacttgagaatcagagtgaagaggggaggaaaggaggcaaactctagctaaggagtattgaac 18321339  T

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Target: scaffold1559 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1559
Description:

Target: scaffold1559; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 61 - 101
Alignment:
Q  45 agaagaggagagaaaatgagacaaaccctagctaaggagaa 85  Q
    |||||||||||| ||| ||| ||||||||||||||||||||    
T  61 agaagaggagaggaaaggaggcaaaccctagctaaggagaa 101  T

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Target: scaffold0118 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 12137 - 12093
Alignment:
Q  52 gagagaaaatgagacaaaccctagctaaggagaattgaacaaaaa 96  Q
    ||||| ||| |||||||||||||||||| ||||||||||| ||||    
T  12137 gagaggaaaggagacaaaccctagctaaagagaattgaaccaaaa 12093  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 326
Target Start/End: Complemental strand, 12089865 - 12089821
Alignment:
Q  282 accaaagttagggtatttgaattgagaacttaaccatgaaaagag 326  Q
    ||||||||||| ||| ||||||||| || ||||||||||||||||    
T  12089865 accaaagttagtgtaattgaattgaaaatttaaccatgaaaagag 12089821  T

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