View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21338_low_12 (Length: 347)
Name: NF21338_low_12
Description: NF21338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21338_low_12 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 20 - 347
Target Start/End: Original strand, 4641593 - 4641917
Alignment:
| Q |
20 |
aagaaccaacgttagtttaatttgatctttactgtgatattgaaattcatagtatt-ttttgtgttccttgcttctttaagtttcttatacatacatgtt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4641593 |
aagaaccaacgttagtttaatttgatctttactgtgatattgaaattcatagtattgttttgtgttccttgcttctttaagtttcttatacatacatgtt |
4641692 |
T |
|
| Q |
119 |
tatttctttaatttgttaagtaagcctcggtttctatacagtttctacgttctacaatgaaaatgaagccttgtcagcaatctcaagtagtcccaaatgc |
218 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4641693 |
catttctttaatttgttaag----cctcggtttctacacagtttctacgttctacaatgaaaatgaagccttgtcagcaatctcaagtagtcccaaatgc |
4641788 |
T |
|
| Q |
219 |
ttccatgttgccatagtggaggtaatgaactttcattttccacgagcnnnnnnnnnnnnnnnnngaattttgtatagcaggctaattaaaatgatgtgaa |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
4641789 |
ttccatgttgccatagtggaggtaatgaactttcattttccacgagcaaaaaataaactaaaaagaattttgtctagtaggctaattaaaatgatgtgaa |
4641888 |
T |
|
| Q |
319 |
tatggagaacttgacggttctcttgatta |
347 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
4641889 |
tatggagaacttgacggttctcttgatta |
4641917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 126 - 258
Target Start/End: Complemental strand, 40803892 - 40803760
Alignment:
| Q |
126 |
ttaatttgttaagtaagcctcggtttctatacagtttctacgttctacaatgaaaatgaagccttgtcagcaatctcaagtagtcccaaatgcttccatg |
225 |
Q |
| |
|
|||| ||||| | ||| |||| |||||||||||||||||| |||| ||| |||||||||||||||||| |||||||||| || || |||||| |
|
|
| T |
40803892 |
ttaagttgtttattaatcctcagtttctatacagtttctatattctgtgatgtgaatgaagccttgtcagcagtctcaagtagacctgaagatttccata |
40803793 |
T |
|
| Q |
226 |
ttgccatagtggaggtaatgaactttcattttc |
258 |
Q |
| |
|
| || |||||||||||||||||||||||||||| |
|
|
| T |
40803792 |
tagctatagtggaggtaatgaactttcattttc |
40803760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 180 - 258
Target Start/End: Complemental strand, 52517003 - 52516925
Alignment:
| Q |
180 |
aatgaagccttgtcagcaatctcaagtagtcccaaatgcttccatgttgccatagtggaggtaatgaactttcattttc |
258 |
Q |
| |
|
|||||||||||||||||| |||||||||| || || |||||| | ||||||||||| ||||||||||||||||||| |
|
|
| T |
52517003 |
aatgaagccttgtcagcagtctcaagtagacctgaagatttccatatagccatagtggaagtaatgaactttcattttc |
52516925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University