View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21338_low_14 (Length: 326)
Name: NF21338_low_14
Description: NF21338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21338_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 6 - 318
Target Start/End: Original strand, 31619404 - 31619716
Alignment:
| Q |
6 |
atatacttacatggtaattttcatagattttttagacgcatatttgagggtgggcagcactggcatgtgggtgaagctacctgctgcaagagccatttga |
105 |
Q |
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||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
31619404 |
atatacttacatggtaattttcatagattttttagactcgtatttgagggttggcagcactggcatgtgggtgaagctacctgccgcaagagccatttga |
31619503 |
T |
|
| Q |
106 |
aatattacaaattatatatcaaacttgattttctccccaaa---taataataatgcagaaagaagcttttgcttgccgttgccaaagttagtatgtttgt |
202 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||| ||||||| || ||||||| |
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| T |
31619504 |
aataatacaaattatatatcaaacttgattttctccccaaacccaaataataatgcagaaagaagc-tttgcttgcagttg-caaagtttgtgtgtttgt |
31619601 |
T |
|
| Q |
203 |
ttaattgtgtcttggtggttaattgaatcacttgaatttatagagaaagaaagaagcatgtcaactttgaacacttcgatggtcaacctatgtgcttgac |
302 |
Q |
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|| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31619602 |
tt-attgtgtcttgatgattaattgaatcacttgaatttatagagaaagaaagaagcatgtcaactttgaacacttcgatggtcaacctatgtgcttgac |
31619700 |
T |
|
| Q |
303 |
tgagaaagataatcat |
318 |
Q |
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|||||||||||||||| |
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| T |
31619701 |
tgagaaagataatcat |
31619716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 6 - 239
Target Start/End: Original strand, 31609275 - 31609504
Alignment:
| Q |
6 |
atatacttacatggtaattttcatagattttttagacgcatatttgagggtgggcagcactggcatgtgggtgaagctacctgctgcaagagccatttga |
105 |
Q |
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| T |
31609275 |
atatacttacatggtaattgtcatagattttttagacgtatatttgagggtgggtagcactggcatgtgggtgaagctacctgctgcaagagccatttga |
31609374 |
T |
|
| Q |
106 |
aatattacaaattatatatcaaacttgattttctccccaaataataataatgcagaaagaagcttttgcttgccgttgccaaagttagtatgtttgttta |
205 |
Q |
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| T |
31609375 |
aatgttacaaattatatatcaaacttgattttctccc---aaaataataatgcacaaagaagc-tttgcttgcagttgccaaagttagtgtgtttgttca |
31609470 |
T |
|
| Q |
206 |
attgtgtcttggtggttaattgaatcacttgaat |
239 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
31609471 |
attgtgtcttggtggttaattgaatcacttgaat |
31609504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 6 - 239
Target Start/End: Original strand, 31624402 - 31624631
Alignment:
| Q |
6 |
atatacttacatggtaattttcatagattttttagacgcatatttgagggtgggcagcactggcatgtgggtgaagctacctgctgcaagagccatttga |
105 |
Q |
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||||||||||||||||||| |||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
31624402 |
atatacttacatggtaattgccatagattttttagacacataattttgggtgggcagcactggcatgtgggtgaagctacctgcagcaagagccatttga |
31624501 |
T |
|
| Q |
106 |
aatattacaaattatatatcaaacttgattttctccccaaataataataatgcagaaagaagcttttgcttgccgttgccaaagttagtatgtttgttta |
205 |
Q |
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|||| |||||||||||||||||||||||||||||||| | |||||| |||||||||||||| |||||||| ||||||||||||||| |||||||| | |
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| T |
31624502 |
aataatacaaattatatatcaaacttgattttctccc---aaaataatcatgcagaaagaagc-tttgcttgtagttgccaaagttagtgtgtttgttca |
31624597 |
T |
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| Q |
206 |
attgtgtcttggtggttaattgaatcacttgaat |
239 |
Q |
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|||||||||||||||||| ||||||||||||||| |
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| T |
31624598 |
attgtgtcttggtggttagttgaatcacttgaat |
31624631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 6 - 239
Target Start/End: Original strand, 31614222 - 31614461
Alignment:
| Q |
6 |
atatacttacatggtaattttcatagattttttagacgcatatttgagggtgggcagcactggcatgtgggtgaagctacctgctgcaagagccatttga |
105 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
31614222 |
atatacttacatggtaattgtcatagattttttagacgcatatttgagggttggcagcactggcatgtgggtgaagctacctgccgcaatagccatttga |
31614321 |
T |
|
| Q |
106 |
aatattacaaat--tatatatcaaacttgattttctcccca-----aataataataatgcagaaagaagcttttgcttgccgttgccaaagttagtatgt |
198 |
Q |
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|||||||||||| |||||||||||||||||||||| || | ||| | |||||||||||||| || ||||||||| ||||||||||||||| ||| |
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| T |
31614322 |
aatattacaaattatatatatcaaacttgattttcttccaaaaaacaatcaaaataatgcagaaagcag-atttgcttgcagttgccaaagttagtgtgt |
31614420 |
T |
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| Q |
199 |
ttgtttaattgtgtcttggtggttaattgaatcacttgaat |
239 |
Q |
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||||| |||||||||||| |||||| || |||| ||||||| |
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| T |
31614421 |
ttgttcaattgtgtcttgatggttagttaaatcccttgaat |
31614461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 6 - 240
Target Start/End: Original strand, 31605663 - 31605892
Alignment:
| Q |
6 |
atatacttacatggtaattttcatagattttttagacgcatatttgagggtgggcagcactggcatgtgggtgaagctacctgctgcaagagccatttga |
105 |
Q |
| |
|
||||||||||||| ||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31605663 |
atatacttacatgctaattgtcatagaatttttagacgtatatttgagggtgggcagcactggcatgtgggtgaagctacctgctgcaagagccatttga |
31605762 |
T |
|
| Q |
106 |
aatattacaaattatatatcaaacttgattttctccccaaataataataatgcagaaagaagcttttgcttgccgttgccaaagttagtatgtttgttta |
205 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||| | |||||| |||||||||||| ||||| | ||| ||||| |||| | ||| || | |
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| T |
31605763 |
aataatacaaattatatatcaaacttgattttctccc---aaaataatcatgcagaaagaaagctttgcatttagttcccaaa--tagtgtatttcttca |
31605857 |
T |
|
| Q |
206 |
attgtgtcttggtggttaattgaatcacttgaatt |
240 |
Q |
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|||||||||||||||||| |||||||||||||||| |
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| T |
31605858 |
attgtgtcttggtggttagttgaatcacttgaatt |
31605892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 260 - 320
Target Start/End: Original strand, 31609558 - 31609617
Alignment:
| Q |
260 |
atgtcaactttgaacacttcgatggtcaacctatgtgcttgactgagaaagataatcattg |
320 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
31609558 |
atgtcaactttgaacatttcgatggtcaacctatgtgcttgact-aggaagataatcattg |
31609617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 260 - 320
Target Start/End: Original strand, 31624704 - 31624764
Alignment:
| Q |
260 |
atgtcaactttgaacacttcgatggtcaacctatgtgcttgactgagaaagataatcattg |
320 |
Q |
| |
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|||||||||||||||| || |||||||||||||||||||||| |||| | || |||||||| |
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| T |
31624704 |
atgtcaactttgaacattttgatggtcaacctatgtgcttgattgaggatgaaaatcattg |
31624764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 260 - 291
Target Start/End: Original strand, 31614551 - 31614582
Alignment:
| Q |
260 |
atgtcaactttgaacacttcgatggtcaacct |
291 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
31614551 |
atgtcaactttgaacacttcgatggtcaacct |
31614582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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