View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21338_low_15 (Length: 307)

Name: NF21338_low_15
Description: NF21338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21338_low_15
NF21338_low_15
[»] chr2 (15 HSPs)
chr2 (1-277)||(30151453-30151730)
chr2 (200-288)||(30151364-30151452)
chr2 (1-189)||(30160444-30160623)
chr2 (213-288)||(30280515-30280590)
chr2 (210-281)||(30791214-30791285)
chr2 (210-288)||(30024070-30024148)
chr2 (210-288)||(30036549-30036627)
chr2 (210-288)||(30117974-30118052)
chr2 (210-288)||(30132731-30132809)
chr2 (210-288)||(30230687-30230765)
chr2 (210-279)||(30069154-30069223)
chr2 (212-281)||(30183138-30183207)
chr2 (217-288)||(30082476-30082547)
chr2 (212-281)||(30253052-30253121)
chr2 (217-281)||(30172971-30173035)
[»] chr3 (2 HSPs)
chr3 (1-210)||(18436336-18436544)
chr3 (1-210)||(18431741-18431949)
[»] chr1 (1 HSPs)
chr1 (211-288)||(32161098-32161174)


Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 30151730 - 30151453
Alignment:
Q  1 gaataagtaaaagatgaaaaagggataaccaattaggtttccaataattgaattatttctgaatgtcaacacagtataatgaaaaaagcatatatatat- 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||     
T  30151730 gaataagtaaaagatgaaaaagggataaccaattaggtttccaataattgaattatttctgaatgtcaacacagtataatgaaaaa-gcatatatatata 30151632  T
Q  100 -ttgttacaatgtaacaattgccattaattagtagtaacaattttaggcaaaataacagc-aacgtatgcacaattttaggcataatatgtgcatttatt 197  Q
     ||||||||||||||||||||||||||||||||||||||  |   | ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30151631 tttgttacaatgtaacaattgccattaattagtagtaacg-taaaaagcaaaataacagctaacgtatgcacaattttaggcataatatgtgcatttatt 30151533  T
Q  198 tactagctcaatagctttcattaggattcccattccatatatgtttcagcgatggtaaatttttcaaagtgagagttctc 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  30151532 tactagctcaatagctttcattaggattcccattccatatatgtttcagcgatggtaagtttttcaaagtgagagttctc 30151453  T

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Target: chr2; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 200 - 288
Target Start/End: Complemental strand, 30151452 - 30151364
Alignment:
Q  200 ctagctcaatagctttcattaggattcccattccatatatgtttcagcgatggtaaatttttcaaagtgagagttctcaatttcatatc 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30151452 ctagctcaatagctttcattaggattcccattccatatatgtttcagcgatggtaaatttttcaaagtgagagttctcaatttcatatc 30151364  T

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Target: chr2; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 30160623 - 30160444
Alignment:
Q  1 gaataagtaaaagatgaaaaagggataaccaattaggtttccaataattgaattatttctgaatgtcaa-cacagtataatgaaaaaagcatatatatat 99  Q
    ||||||||||||||||||||||||||||          |||||||||||||||||||| ||||||| || ||||||||||||||||| ||||||||||||    
T  30160623 gaataagtaaaagatgaaaaagggataa----------ttccaataattgaattatttttgaatgtaaaacacagtataatgaaaaaggcatatatatat 30160534  T
Q  100 ttgttacaatgtaacaattgccattaattagtagtaacaattttaggcaaaataacagc-aacgtatgcacaattttaggcataatatgtg 189  Q
    |||||||||||||||||||||||||||||||| |||||  |   | ||||||||||||| |||| |||||||||  |||||||||||||||    
T  30160533 ttgttacaatgtaacaattgccattaattagtggtaac-gtaaaaagcaaaataacagctaacgcatgcacaatactaggcataatatgtg 30160444  T

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Target: chr2; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 213 - 288
Target Start/End: Complemental strand, 30280590 - 30280515
Alignment:
Q  213 tttcattaggattcccattccatatatgtttcagcgatggtaaatttttcaaagtgagagttctcaatttcatatc 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30280590 tttcattaggattcccattccatatatgtttcagcgatggtaaatttttcaaagtgagagttctcaatttcatatc 30280515  T

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Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 210 - 281
Target Start/End: Complemental strand, 30791285 - 30791214
Alignment:
Q  210 agctttcattaggattcccattccatatatgtttcagcgatggtaaatttttcaaagtgagagttctcaatt 281  Q
    |||| ||||||||||||||| ||||||| || ||||||  ||||||||||||||||||||||||||||||||    
T  30791285 agctgtcattaggattcccactccatatttgcttcagcattggtaaatttttcaaagtgagagttctcaatt 30791214  T

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Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 288
Target Start/End: Complemental strand, 30024148 - 30024070
Alignment:
Q  210 agctttcattaggattcccattccatatatgtttcagcgatggtaaatttttcaaagtgagagttctcaatttcatatc 288  Q
    |||||||||||||||||||| ||||||| ||||| | |   |||||||||||||||||||||||| |||||| ||||||    
T  30024148 agctttcattaggattcccactccatatgtgttttaacatcggtaaatttttcaaagtgagagttttcaattgcatatc 30024070  T

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Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 288
Target Start/End: Original strand, 30036549 - 30036627
Alignment:
Q  210 agctttcattaggattcccattccatatatgtttcagcgatggtaaatttttcaaagtgagagttctcaatttcatatc 288  Q
    |||||||||||||||||||| ||||||| ||||| | |   |||||||||||||||||||||||| |||||| ||||||    
T  30036549 agctttcattaggattcccactccatatgtgttttaacatcggtaaatttttcaaagtgagagttttcaattgcatatc 30036627  T

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Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 288
Target Start/End: Original strand, 30117974 - 30118052
Alignment:
Q  210 agctttcattaggattcccattccatatatgtttcagcgatggtaaatttttcaaagtgagagttctcaatttcatatc 288  Q
    |||||||||||||||||||| ||||||| ||||| | |   |||||||||||||||||||||||| |||||| ||||||    
T  30117974 agctttcattaggattcccactccatatgtgttttaacatcggtaaatttttcaaagtgagagttttcaattgcatatc 30118052  T

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Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 288
Target Start/End: Original strand, 30132731 - 30132809
Alignment:
Q  210 agctttcattaggattcccattccatatatgtttcagcgatggtaaatttttcaaagtgagagttctcaatttcatatc 288  Q
    |||||||||||||||||||| ||||||| ||||| | |   |||||||||||||||||||||||| |||||| ||||||    
T  30132731 agctttcattaggattcccactccatatgtgttttaacatcggtaaatttttcaaagtgagagttttcaattgcatatc 30132809  T

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Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 288
Target Start/End: Original strand, 30230687 - 30230765
Alignment:
Q  210 agctttcattaggattcccattccatatatgtttcagcgatggtaaatttttcaaagtgagagttctcaatttcatatc 288  Q
    |||||||||||||||||||| ||||||| ||||| | |   |||||||||||||||||||||||| |||||| ||||||    
T  30230687 agctttcattaggattcccactccatatgtgttttaacatcggtaaatttttcaaagtgagagttttcaattgcatatc 30230765  T

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Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 210 - 279
Target Start/End: Complemental strand, 30069223 - 30069154
Alignment:
Q  210 agctttcattaggattcccattccatatatgtttcagcgatggtaaatttttcaaagtgagagttctcaa 279  Q
    |||||||||||||||||||| ||||||||||| ||| |  |||||||| ||||||| |||||||||||||    
T  30069223 agctttcattaggattcccactccatatatgtctcaacattggtaaatgtttcaaactgagagttctcaa 30069154  T

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Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 281
Target Start/End: Original strand, 30183138 - 30183207
Alignment:
Q  212 ctttcattaggattcccattccatatatgtttcagcgatggtaaatttttcaaagtgagagttctcaatt 281  Q
    |||||||||||||||||| |||| || |||||||||   |||||||  ||||||||||||||||||||||    
T  30183138 ctttcattaggattcccactccaaatgtgtttcagcatcggtaaatggttcaaagtgagagttctcaatt 30183207  T

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Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 288
Target Start/End: Complemental strand, 30082547 - 30082476
Alignment:
Q  217 attaggattcccattccatatatgtttcagcgatggtaaatttttcaaagtgagagttctcaatttcatatc 288  Q
    ||||||||||||| ||||||| ||||| | |   |||||||||||||||||||||||| |||||| ||||||    
T  30082547 attaggattcccactccatatgtgttttaacatcggtaaatttttcaaagtgagagttttcaattgcatatc 30082476  T

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Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 212 - 281
Target Start/End: Complemental strand, 30253121 - 30253052
Alignment:
Q  212 ctttcattaggattcccattccatatatgtttcagcgatggtaaatttttcaaagtgagagttctcaatt 281  Q
    |||||||||||||||| | ||||||| ||||| ||  ||||||||| |||||||||||| |||| |||||    
T  30253121 ctttcattaggattccaactccatatgtgtttaagtaatggtaaatgtttcaaagtgagggttcccaatt 30253052  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 281
Target Start/End: Complemental strand, 30173035 - 30172971
Alignment:
Q  217 attaggattcccattccatatatgtttcagcgatggtaaatttttcaaagtgagagttctcaatt 281  Q
    ||||||||||||  ||||||| |||||||||   ||||||| ||||| ||||||||||| |||||    
T  30173035 attaggattcccgctccatatgtgtttcagcatcggtaaatgtttcagagtgagagttcgcaatt 30172971  T

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Target: chr3 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 18436336 - 18436544
Alignment:
Q  1 gaataagtaaaagatgaaaaagggataaccaattaggtttccaataattgaattatttctgaatgtcaacacagtataatgaaaaaagcatatatatatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||| |||||||||||||    
T  18436336 gaataagtaaaagatgaaaaagggataaccaattaggtttccaataattgaattatttctcaatgtcaactcagtataatg-aaaaggcatatatatatt 18436434  T
Q  101 tgttacaatgtaacaattgccattaattagtagtaacaattttaggcaaaataacagc-aacgtatgcacaattttaggcataatatgtgcatttattta 199  Q
    |||||||||||||||||||||||||||||||||||||  |   | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  18436435 tgttacaatgtaacaattgccattaattagtagtaac-gtaaaaagcaaaataacagcaaacgtatgcacaattttaggcataatatgtgcatttattta 18436533  T
Q  200 ctagctcaata 210  Q
    |||||||||||    
T  18436534 ctagctcaata 18436544  T

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Target: chr3; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 18431741 - 18431949
Alignment:
Q  1 gaataagtaaaagatgaaaaagggataaccaattaggtttccaataattgaattatttctgaatgtcaacacagtataatgaaaaaagcatatatatatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||| |||||||||||||    
T  18431741 gaataagtaaaagatgaaaaagggataaccaattaggtttccaataattgaattatttctcaatgtcaactcagtataatg-aaaaggcatatatatatt 18431839  T
Q  101 tgttacaatgtaacaattgccattaattagtagtaacaattttaggcaaaataacagc-aacgtatgcacaattttaggcataatatgtgcatttattta 199  Q
    |||||||||||||||||||||||||||||||||||||  |   | ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  18431840 tgttacaatgtaacaattgccattaattagtagtaac-gtaaaaagcaaaataacagcaaacgtatgcataattttaggcataatatgtgcatttattta 18431938  T
Q  200 ctagctcaata 210  Q
    |||||||||||    
T  18431939 ctagctcaata 18431949  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 288
Target Start/End: Complemental strand, 32161174 - 32161098
Alignment:
Q  211 gctttcattaggattcccattccatatatgtttcagcgatggtaaatttttcaaagtgagagttctcaatttcatatc 288  Q
    ||||||||||||||||| || |||||| || |||| |   |||||||| ||||||||||||||| |||||| ||||||    
T  32161174 gctttcattaggattcc-atgccatatgtgcttcaacatcggtaaattcttcaaagtgagagttttcaattgcatatc 32161098  T

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