View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21338_low_17 (Length: 247)
Name: NF21338_low_17
Description: NF21338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21338_low_17 |
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| [»] scaffold0794 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 17 - 235
Target Start/End: Complemental strand, 11445534 - 11445316
Alignment:
| Q |
17 |
agaaacaacatattctctcactcctccttcaatgcttctcataagtggcaaatcaacatgtttgtcaccatttgttagcggagtgcttcatccatgtcgt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11445534 |
agaaacaacatattctctcactcctccttcaatgcttctcataagtggcaaatcaacatgtttgtcaccatttgttagcggagtgcttcatccatgtcgt |
11445435 |
T |
|
| Q |
117 |
ctgaacatgtggcactcctctaagaaatggctcactgaggacaaggaacttagcctctttgagagcgcaagaggagagacattttgggactatcttaaca |
216 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11445434 |
ctgaacgtgtggcactcctctaagaaatggctcactgaggacaaggaactcagcctatttgagagcgcaagaggagagacattttgggactatcttaaca |
11445335 |
T |
|
| Q |
217 |
aagatactgaatctgatga |
235 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
11445334 |
aagatactgaatctgatga |
11445316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 17 - 235
Target Start/End: Original strand, 11547556 - 11547774
Alignment:
| Q |
17 |
agaaacaacatattctctcactcctccttcaatgcttctcataagtggcaaatcaacatgtttgtcaccatttgttagcggagtgcttcatccatgtcgt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11547556 |
agaaacaacatattctctcactcctccttcaatgcttctcataagtggcaaatcaacatgtttgtcaccatttgttagcggagtgcttcatccatgtcgt |
11547655 |
T |
|
| Q |
117 |
ctgaacatgtggcactcctctaagaaatggctcactgaggacaaggaacttagcctctttgagagcgcaagaggagagacattttgggactatcttaaca |
216 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11547656 |
ctgaacgtgtggcactcctctaagaaatggctcactgaggacaaggaactcagcctatttgagagcgcaagaggagagacattttgggactatcttaaca |
11547755 |
T |
|
| Q |
217 |
aagatactgaatctgatga |
235 |
Q |
| |
|
||||||||||||||||||| |
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| T |
11547756 |
aagatactgaatctgatga |
11547774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 17 - 235
Target Start/End: Original strand, 11507325 - 11507543
Alignment:
| Q |
17 |
agaaacaacatattctctcactcctccttcaatgcttctcataagtggcaaatcaacatgtttgtcaccatttgttagcggagtgcttcatccatgtcgt |
116 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||| |
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|
| T |
11507325 |
agaaacaatatattctctcactcctccttcaatgcttctcataagtggcaaatcaacatgtttgtcaccatttgttaccggaacggttcatccatgtcgt |
11507424 |
T |
|
| Q |
117 |
ctgaacatgtggcactcctctaagaaatggctcactgaggacaaggaacttagcctctttgagagcgcaagaggagagacattttgggactatcttaaca |
216 |
Q |
| |
|
|||||||| ||| ||||||||| |||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11507425 |
ctgaacatatggtactcctctacgaaatggctcactgaggagaaggaactcagtctctttgagagcgcaagaggagagacattttgggactatcttaaca |
11507524 |
T |
|
| Q |
217 |
aagatactgaatctgatga |
235 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
11507525 |
aagatactgaatctgatga |
11507543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 233
Target Start/End: Complemental strand, 11468524 - 11468308
Alignment:
| Q |
17 |
agaaacaacatattctctcactcctccttcaatgcttctcataagtggcaaatcaacatgtttgtcaccatttgttagcggagtgcttcatccatgtcgt |
116 |
Q |
| |
|
||||||| | ||| ||||||| |||||||||| ||||||||| | ||| ||||||| ||||| ||||| |||||| ||| | |||||||||||| | |
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|
| T |
11468524 |
agaaacagcttatgctctcacacctccttcaaagcttctcatcaatggtgaatcaacttgttttgcaccacttgttaagggaattcttcatccatgttct |
11468425 |
T |
|
| Q |
117 |
ctgaacatgtggcactcctctaagaaatggctcactgaggacaaggaacttagcctctttgagagcgcaagaggagagacattttgggactatcttaaca |
216 |
Q |
| |
|
||| | |||||||||||||||||||||||| || | ||||| ||||| ||| || | ||| || |||| || |||||||||| ||| |||||||| |
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|
| T |
11468424 |
ctggatatgtggcactcctctaagaaatggttctcagaggagaaggatcttgcactttatgaaagtgcaatgggggagacattttttaactttcttaaca |
11468325 |
T |
|
| Q |
217 |
aagatactgaatctgat |
233 |
Q |
| |
|
||||| ||||||||||| |
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|
| T |
11468324 |
aagattctgaatctgat |
11468308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 233
Target Start/End: Original strand, 11522937 - 11523153
Alignment:
| Q |
17 |
agaaacaacatattctctcactcctccttcaatgcttctcataagtggcaaatcaacatgtttgtcaccatttgttagcggagtgcttcatccatgtcgt |
116 |
Q |
| |
|
||||||| | ||| ||||||| |||||||||| ||||||||| | ||| ||||||| ||||| ||||| |||||| ||| | |||||||||||| | |
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|
| T |
11522937 |
agaaacagcttatgctctcacacctccttcaaagcttctcatcaatggtgaatcaacttgttttgcaccacttgttaagggaattcttcatccatgttct |
11523036 |
T |
|
| Q |
117 |
ctgaacatgtggcactcctctaagaaatggctcactgaggacaaggaacttagcctctttgagagcgcaagaggagagacattttgggactatcttaaca |
216 |
Q |
| |
|
||| | |||||||||||||||||||||||| || | ||||| ||||| ||| || | ||| || |||| || |||||||||| ||| |||||||| |
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| T |
11523037 |
ctggatatgtggcactcctctaagaaatggttctcagaggagaaggatcttgcactttatgaaagtgcaatgggggagacattttttaactttcttaaca |
11523136 |
T |
|
| Q |
217 |
aagatactgaatctgat |
233 |
Q |
| |
|
||||| ||||||||||| |
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| T |
11523137 |
aagattctgaatctgat |
11523153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 230
Target Start/End: Original strand, 34775927 - 34776132
Alignment:
| Q |
25 |
catattctctcactcctccttcaatgcttctcataagtggcaaatcaacatgtttgtcaccatttgttagcggagtgcttcatccatgtcgtctgaacat |
124 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||||||| ||| |||||||||| || || |||||| |||| ||||||||| || | | |||| |
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|
| T |
34775927 |
catattctctcacacctccttcaaagcttctcataagtggaaaaccaacatgtttatcttcaattgttaaaggagcacttcatccaagttctttagacat |
34776026 |
T |
|
| Q |
125 |
gtggcactcctctaagaaatggctcactgaggacaaggaacttagcctctttgagagcgcaagaggagagacattttgggactatcttaacaaagatact |
224 |
Q |
| |
|
|||| ||||| ||||||||| ||| ||| || ||||||| | | |||||| | |||| ||| |||| |||||||| | ||||||||||||| || |
|
|
| T |
34776027 |
gtggagttcctcaaagaaatggttcaatgaagataaggaacaaacattgtttgagtgtgcaacaggggagagtttttgggattttcttaacaaagattct |
34776126 |
T |
|
| Q |
225 |
gaatct |
230 |
Q |
| |
|
|||||| |
|
|
| T |
34776127 |
gaatct |
34776132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0794 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: scaffold0794
Description:
Target: scaffold0794; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 17 - 235
Target Start/End: Original strand, 1982 - 2200
Alignment:
| Q |
17 |
agaaacaacatattctctcactcctccttcaatgcttctcataagtggcaaatcaacatgtttgtcaccatttgttagcggagtgcttcatccatgtcgt |
116 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||| |
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|
| T |
1982 |
agaaacaatatattctctcactcctccttcaatgcttctcataagtggcaaatcaacatgtttgtcaccatttgttaccggaacggttcatccatgtcgt |
2081 |
T |
|
| Q |
117 |
ctgaacatgtggcactcctctaagaaatggctcactgaggacaaggaacttagcctctttgagagcgcaagaggagagacattttgggactatcttaaca |
216 |
Q |
| |
|
|||||||| ||| ||||||||| |||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2082 |
ctgaacatatggtactcctctacgaaatggctcactgaggagaaggaactcagtctctttgagagcgcaagaggagagacattttgggactatcttaaca |
2181 |
T |
|
| Q |
217 |
aagatactgaatctgatga |
235 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
2182 |
aagatactgaatctgatga |
2200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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