View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21338_low_4 (Length: 522)
Name: NF21338_low_4
Description: NF21338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21338_low_4 |
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| [»] scaffold0031 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 232
Target Start/End: Original strand, 47649120 - 47649335
Alignment:
| Q |
17 |
acaaattctcaatcataatatcctcacaaatgcatcaagtcgtgtctccacgaatccatctcaactcgaaataaaatttggacaaaattgtatgctaaat |
116 |
Q |
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| T |
47649120 |
acaaattctcaatcataatatcctcacaaatgcatcaagtcgtgtctccacgaatccatctcaactcgaaataaaatttggacaaaattgtatgctaaat |
47649219 |
T |
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| Q |
117 |
gtcaagaaaaattacttacaatttctctgaagtggtgttattatccttgtgagcaagctcggacattatattaagtgcactacaaaattgtccaccgata |
216 |
Q |
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| T |
47649220 |
gtcaagaaaaattacttacaatttctctgaagtggtgttattatccttgtgagcacgctcggacattatattaagtgcactacaaaattgtccaccgata |
47649319 |
T |
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| Q |
217 |
ccctatagaaatattc |
232 |
Q |
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|||||||||||||||| |
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| T |
47649320 |
ccctatagaaatattc |
47649335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 321 - 513
Target Start/End: Original strand, 47649424 - 47649616
Alignment:
| Q |
321 |
accaactatggtcatttatatacttacttagaaattcatcatttgactaaacatatttgccattttttcctcaacttgtttctccatcttttctcctagt |
420 |
Q |
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| T |
47649424 |
accaactatggtcatttatatacttacttagaaattcatcatttgactaaacatatttgccattttttcctcaacttgtttctccatcttttctcctagt |
47649523 |
T |
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| Q |
421 |
tgccttagactctcttcaaattttgccgtcatttcttccctcatgtttcgctccttttcgagttgagtctctacttcttttaacttcatctct |
513 |
Q |
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| T |
47649524 |
tgccttagactctcttcaaattttgccgtcatttcttccctcatgtttcgctccttttcgagttgagtctctacttcttttaacttcatctct |
47649616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 156; Significance: 1e-82; HSPs: 2)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 334 - 513
Target Start/End: Original strand, 91601 - 91780
Alignment:
| Q |
334 |
atttatatacttacttagaaattcatcatttgactaaacatatttgccattttttcctcaacttgtttctccatcttttctcctagttgccttagactct |
433 |
Q |
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| T |
91601 |
atttatatacttactttgaaattcatcatttgactaaacatatttgccattttttcctcaacttgtttctccatcttttcccctagttgcctttgactct |
91700 |
T |
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| Q |
434 |
cttcaaattttgccgtcatttcttccctcatgtttcgctccttttcgagttgagtctctacttcttttaacttcatctct |
513 |
Q |
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| T |
91701 |
cttcaaattttgccgtcatttcttccctcatgtttcgctcttttccgagttgagtctcaacttcttttaacttcatctct |
91780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 117 - 232
Target Start/End: Original strand, 91410 - 91523
Alignment:
| Q |
117 |
gtcaagaaaaattacttacaatttctctgaagtggtgttattatccttgtgagcaagctcggacattatattaagtgcactacaaaattgtccaccgata |
216 |
Q |
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| T |
91410 |
gtcaagaaaaattgcttacaatttct--ggagtcatgttattatccttgtgaacaagttcatacattatattaagtgcactagaaaattgtccaccgata |
91507 |
T |
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| Q |
217 |
ccctatagaaatattc |
232 |
Q |
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| T |
91508 |
ccctataaaaatattc |
91523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 17 - 193
Target Start/End: Original strand, 30753228 - 30753404
Alignment:
| Q |
17 |
acaaattctcaatcataatatcctcacaaatgcatcaagtcgtgtctccacgaatccatctcaactcgaaataaaatttggacaaaattgtatgctaaat |
116 |
Q |
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||||||||||||| | |||||||||||||| ||| |||||||| |||||| || ||||||||| || ||||||||||| ||||||||||||| ||||| |
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| T |
30753228 |
acaaattctcaattagaatatcctcacaaacgcagcaagtcgtttctccatcaagccatctcaattcaaaataaaatttagacaaaattgtattctaaaa |
30753327 |
T |
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| Q |
117 |
gtcaagaaaaattacttacaatttctctgaagtggtgttattatccttgtgagcaagctcggacattatattaagtg |
193 |
Q |
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| T |
30753328 |
gtcaagaaaaattacttccaatttctctgaagtcgtgttattatccttatgaacaagttcagacattatcttaagtg |
30753404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 36518223 - 36518168
Alignment:
| Q |
42 |
acaaatgcatcaagtcgtgtctccacgaatccatctcaactcgaaataaaatttgg |
97 |
Q |
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| T |
36518223 |
acaaatgcattaaaccatgtctccaccaatccatctcaactccaaataaaatttgg |
36518168 |
T |
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