View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21338_low_7 (Length: 492)

Name: NF21338_low_7
Description: NF21338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21338_low_7
NF21338_low_7
[»] chr4 (10 HSPs)
chr4 (426-465)||(36680233-36680272)
chr4 (232-322)||(36675364-36675450)
chr4 (395-429)||(31110482-31110516)
chr4 (392-429)||(12144776-12144813)
chr4 (396-429)||(15782511-15782544)
chr4 (392-429)||(30966845-30966882)
chr4 (392-429)||(34853350-34853387)
chr4 (392-429)||(36405850-36405886)
chr4 (392-429)||(50138512-50138549)
chr4 (290-326)||(36695094-36695130)
[»] chr8 (6 HSPs)
chr8 (392-429)||(37611299-37611336)
chr8 (392-429)||(11424332-11424369)
chr8 (392-429)||(20076380-20076417)
chr8 (392-429)||(22686767-22686804)
chr8 (392-429)||(25653728-25653765)
chr8 (396-429)||(41708852-41708885)
[»] chr6 (6 HSPs)
chr6 (392-429)||(29239697-29239734)
chr6 (392-429)||(308554-308591)
chr6 (392-429)||(21226954-21226991)
chr6 (392-429)||(24602639-24602676)
chr6 (392-429)||(26475787-26475824)
chr6 (392-429)||(31733281-31733318)
[»] chr7 (8 HSPs)
chr7 (393-429)||(24757385-24757421)
chr7 (392-429)||(5909737-5909774)
chr7 (392-429)||(10659956-10659993)
chr7 (392-429)||(19336067-19336104)
chr7 (392-429)||(21852966-21853003)
chr7 (392-429)||(24555729-24555766)
chr7 (393-429)||(13279414-13279450)
chr7 (393-429)||(16902335-16902370)
[»] chr5 (4 HSPs)
chr5 (392-428)||(26034870-26034906)
chr5 (392-429)||(9673125-9673162)
chr5 (392-429)||(28519511-28519548)
chr5 (393-429)||(24098660-24098696)
[»] scaffold0430 (1 HSPs)
scaffold0430 (392-429)||(12509-12546)
[»] scaffold0010 (1 HSPs)
scaffold0010 (392-429)||(145353-145390)
[»] scaffold0001 (1 HSPs)
scaffold0001 (392-429)||(53518-53555)
[»] chr3 (9 HSPs)
chr3 (392-429)||(9650101-9650138)
chr3 (392-429)||(15096549-15096586)
chr3 (392-429)||(17261049-17261086)
chr3 (392-429)||(18945824-18945861)
chr3 (392-429)||(19756886-19756923)
chr3 (392-429)||(35434068-35434105)
chr3 (392-429)||(39846577-39846613)
chr3 (393-429)||(27760518-27760554)
chr3 (393-429)||(34062335-34062371)
[»] chr2 (6 HSPs)
chr2 (392-429)||(18544002-18544039)
chr2 (392-429)||(23045191-23045228)
chr2 (392-429)||(31108371-31108408)
chr2 (392-429)||(35337132-35337168)
chr2 (392-429)||(36944226-36944263)
chr2 (393-429)||(30371409-30371445)
[»] chr1 (5 HSPs)
chr1 (392-429)||(15961737-15961774)
chr1 (392-429)||(24730081-24730118)
chr1 (392-429)||(46208224-46208261)
chr1 (392-429)||(50721922-50721959)
chr1 (392-429)||(51809780-51809817)


Alignment Details
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 426 - 465
Target Start/End: Original strand, 36680233 - 36680272
Alignment:
Q  426 attaacccttttttggattcagctcctttaatgcaagtaa 465  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  36680233 attaacccttttttggattcagctcctttaatgcaagtaa 36680272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 232 - 322
Target Start/End: Original strand, 36675364 - 36675450
Alignment:
Q  232 aatcctcaacagccagtttgtctacagcccctttaatttgctgcactattctcatcctttggattaatctaatgattaagatatttattaa 322  Q
    ||||||||||||| | |||||||||| |||| |     ||||||||||||||||||  ||||||||||| ||||||  |||||||||||||    
T  36675364 aatcctcaacagcaattttgtctacaaccccctc----tgctgcactattctcatctgttggattaatccaatgatcgagatatttattaa 36675450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 395 - 429
Target Start/End: Original strand, 31110482 - 31110516
Alignment:
Q  395 tttacaggtggaaaaaccaaaaatgacctatatta 429  Q
    |||||||| ||||||||||||||||||||||||||    
T  31110482 tttacagggggaaaaaccaaaaatgacctatatta 31110516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Original strand, 12144776 - 12144813
Alignment:
Q  392 tattttacaggtggaaaaaccaaaaatgacctatatta 429  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  12144776 tattttacaggaggaaaaacaaaaaatgacctatatta 12144813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 429
Target Start/End: Original strand, 15782511 - 15782544
Alignment:
Q  396 ttacaggtggaaaaaccaaaaatgacctatatta 429  Q
    ||||||| ||||||||||||||||||||||||||    
T  15782511 ttacagggggaaaaaccaaaaatgacctatatta 15782544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Original strand, 30966845 - 30966882
Alignment:
Q  392 tattttacaggtggaaaaaccaaaaatgacctatatta 429  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  30966845 tattttacagggggaaaaaccaaaaataacctatatta 30966882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Original strand, 34853350 - 34853387
Alignment:
Q  392 tattttacaggtggaaaaaccaaaaatgacctatatta 429  Q
    ||||||||||| || |||||||||||||||||||||||    
T  34853350 tattttacaggagggaaaaccaaaaatgacctatatta 34853387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Original strand, 36405850 - 36405886
Alignment:
Q  392 tattttacaggtggaaaaaccaaaaatgacctatatta 429  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  36405850 tattttacagg-ggaaaaaccaaaaatgacctatatta 36405886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Complemental strand, 50138549 - 50138512
Alignment:
Q  392 tattttacaggtggaaaaaccaaaaatgacctatatta 429  Q
    ||||||||||| ||||||||| ||||||||||||||||    
T  50138549 tattttacagggggaaaaaccgaaaatgacctatatta 50138512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 326
Target Start/End: Original strand, 36695094 - 36695130
Alignment:
Q  290 ttggattaatctaatgattaagatatttattaaacac 326  Q
    ||||||||||| ||||||| |||||||||||||||||    
T  36695094 ttggattaatccaatgattgagatatttattaaacac 36695130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 392 - 429
Target Start/End: Complemental strand, 37611336 - 37611299
Alignment:
Q  392 tattttacaggtggaaaaaccaaaaatgacctatatta 429  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  37611336 tattttacagggggaaaaaccaaaaatgacctatatta 37611299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Original strand, 11424332 - 11424369
Alignment:
Q  392 tattttacaggtggaaaaaccaaaaatgacctatatta 429  Q
    ||||||||||| || |||||||||||||||||||||||    
T  11424332 tattttacaggggggaaaaccaaaaatgacctatatta 11424369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Original strand, 20076380 - 20076417
Alignment:
Q  392 tattttacaggtggaaaaaccaaaaatgacctatatta 429  Q
    ||||||||||| || |||||||||||||||||||||||    
T  20076380 tattttacaggggggaaaaccaaaaatgacctatatta 20076417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Complemental strand, 22686804 - 22686767
Alignment:
Q  392 tattttacaggtggaaaaaccaaaaatgacctatatta 429  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  22686804 tattttacagggggaaaaacaaaaaatgacctatatta 22686767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Complemental strand, 25653765 - 25653728
Alignment:
Q  392 tattttacaggtggaaaaaccaaaaatgacctatatta 429  Q
    ||||||||||| || |||||||||||||||||||||||    
T  25653765 tattttacaggggggaaaaccaaaaatgacctatatta 25653728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 429
Target Start/End: Complemental strand, 41708885 - 41708852
Alignment:
Q  396 ttacaggtggaaaaaccaaaaatgacctatatta 429  Q
    ||||||| ||||||||||||||||||||||||||    
T  41708885 ttacagggggaaaaaccaaaaatgacctatatta 41708852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 392 - 429
Target Start/End: Original strand, 29239697 - 29239734
Alignment:
Q  392 tattttacaggtggaaaaaccaaaaatgacctatatta 429  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  29239697 tattttacagggggaaaaaccaaaaatgacctatatta 29239734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Original strand, 308554 - 308591
Alignment:
Q  392 tattttacaggtggaaaaaccaaaaatgacctatatta 429  Q
    ||||||||||| || |||||||||||||||||||||||    
T  308554 tattttacaggggggaaaaccaaaaatgacctatatta 308591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Original strand, 21226954 - 21226991
Alignment:
Q  392 tattttacaggtggaaaaaccaaaaatgacctatatta 429  Q
    ||||||||||| || |||||||||||||||||||||||    
T  21226954 tattttacaggggggaaaaccaaaaatgacctatatta 21226991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Original strand, 24602639 - 24602676
Alignment:
Q  392 tattttacaggtggaaaaaccaaaaatgacctatatta 429  Q
    ||||||||||| || |||||||||||||||||||||||    
T  24602639 tattttacaggggggaaaaccaaaaatgacctatatta 24602676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Complemental strand, 26475824 - 26475787
Alignment:
Q  392 tattttacaggtggaaaaaccaaaaatgacctatatta 429  Q
    ||||||||||| || |||||||||||||||||||||||    
T  26475824 tattttacaggaggtaaaaccaaaaatgacctatatta 26475787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Original strand, 31733281 - 31733318
Alignment:
Q  392 tattttacaggtggaaaaaccaaaaatgacctatatta 429  Q
    ||||||||||| || |||||||||||||||||||||||    
T  31733281 tattttacaggggggaaaaccaaaaatgacctatatta 31733318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 429
Target Start/End: Complemental strand, 24757421 - 24757385
Alignment:
Q  393 attttacaggtggaaaaaccaaaaatgacctatatta 429  Q
    |||||||||| ||||||||||||||||||||||||||    
T  24757421 attttacagggggaaaaaccaaaaatgacctatatta 24757385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Complemental strand, 5909774 - 5909737
Alignment:
Q  392 tattttacaggtggaaaaaccaaaaatgacctatatta 429  Q
    ||||||||||| |||||||||| |||||||||||||||    
T  5909774 tattttacagggggaaaaaccagaaatgacctatatta 5909737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Original strand, 10659956 - 10659993
Alignment:
Q  392 tattttacaggtggaaaaaccaaaaatgacctatatta 429  Q
    ||||||||||| || |||||||||||||||||||||||    
T  10659956 tattttacaggggggaaaaccaaaaatgacctatatta 10659993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Complemental strand, 19336104 - 19336067
Alignment:
Q  392 tattttacaggtggaaaaaccaaaaatgacctatatta 429  Q
    ||||||||||| || |||||||||||||||||||||||    
T  19336104 tattttacaggggggaaaaccaaaaatgacctatatta 19336067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Original strand, 21852966 - 21853003
Alignment:
Q  392 tattttacaggtggaaaaaccaaaaatgacctatatta 429  Q
    ||||||||||| || |||||||||||||||||||||||    
T  21852966 tattttacaggagggaaaaccaaaaatgacctatatta 21853003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Complemental strand, 24555766 - 24555729
Alignment:
Q  392 tattttacaggtggaaaaaccaaaaatgacctatatta 429  Q
    ||||||||||||||||||| || |||||||||||||||    
T  24555766 tattttacaggtggaaaaatcagaaatgacctatatta 24555729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 429
Target Start/End: Original strand, 13279414 - 13279450
Alignment:
Q  393 attttacaggtggaaaaaccaaaaatgacctatatta 429  Q
    |||||||||| ||||||||| ||||||||||||||||    
T  13279414 attttacagggggaaaaaccgaaaatgacctatatta 13279450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 429
Target Start/End: Original strand, 16902335 - 16902370
Alignment:
Q  393 attttacaggtggaaaaaccaaaaatgacctatatta 429  Q
    |||||||||| ||||||||||||||||||||||||||    
T  16902335 attttacagg-ggaaaaaccaaaaatgacctatatta 16902370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 392 - 428
Target Start/End: Complemental strand, 26034906 - 26034870
Alignment:
Q  392 tattttacaggtggaaaaaccaaaaatgacctatatt 428  Q
    ||||||||||| |||||||||||||||||||||||||    
T  26034906 tattttacagggggaaaaaccaaaaatgacctatatt 26034870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Original strand, 9673125 - 9673162
Alignment:
Q  392 tattttacaggtggaaaaaccaaaaatgacctatatta 429  Q
    ||||||||||| || |||||||||||||||||||||||    
T  9673125 tattttacaggggggaaaaccaaaaatgacctatatta 9673162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Complemental strand, 28519548 - 28519511
Alignment:
Q  392 tattttacaggtggaaaaaccaaaaatgacctatatta 429  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  28519548 tattttacagggggaaaaacaaaaaatgacctatatta 28519511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 429
Target Start/End: Original strand, 24098660 - 24098696
Alignment:
Q  393 attttacaggtggaaaaaccaaaaatgacctatatta 429  Q
    |||||||||| || |||||||||||||||||||||||    
T  24098660 attttacaggagggaaaaccaaaaatgacctatatta 24098696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0430 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0430
Description:

Target: scaffold0430; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Complemental strand, 12546 - 12509
Alignment:
Q  392 tattttacaggtggaaaaaccaaaaatgacctatatta 429  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  12546 tattttacagggggaaaaacaaaaaatgacctatatta 12509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Complemental strand, 145390 - 145353
Alignment:
Q  392 tattttacaggtggaaaaaccaaaaatgacctatatta 429  Q
    ||||||||||| ||||||| ||||||||||||||||||    
T  145390 tattttacagggggaaaaatcaaaaatgacctatatta 145353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Original strand, 53518 - 53555
Alignment:
Q  392 tattttacaggtggaaaaaccaaaaatgacctatatta 429  Q
    ||||||||||| || |||||||||||||||||||||||    
T  53518 tattttacaggggggaaaaccaaaaatgacctatatta 53555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Original strand, 9650101 - 9650138
Alignment:
Q  392 tattttacaggtggaaaaaccaaaaatgacctatatta 429  Q
    ||||||||||| |||||||||||||||||| |||||||    
T  9650101 tattttacagggggaaaaaccaaaaatgacatatatta 9650138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Complemental strand, 15096586 - 15096549
Alignment:
Q  392 tattttacaggtggaaaaaccaaaaatgacctatatta 429  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  15096586 tattttacagggggaaaaacaaaaaatgacctatatta 15096549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Complemental strand, 17261086 - 17261049
Alignment:
Q  392 tattttacaggtggaaaaaccaaaaatgacctatatta 429  Q
    ||||||||||| || |||||||||||||||||||||||    
T  17261086 tattttacaggagggaaaaccaaaaatgacctatatta 17261049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Complemental strand, 18945861 - 18945824
Alignment:
Q  392 tattttacaggtggaaaaaccaaaaatgacctatatta 429  Q
    ||||||||||| || |||||||||||||||||||||||    
T  18945861 tattttacagggggtaaaaccaaaaatgacctatatta 18945824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Complemental strand, 19756923 - 19756886
Alignment:
Q  392 tattttacaggtggaaaaaccaaaaatgacctatatta 429  Q
    ||||||||||| || |||||||||||||||||||||||    
T  19756923 tattttacaggggggaaaaccaaaaatgacctatatta 19756886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Original strand, 35434068 - 35434105
Alignment:
Q  392 tattttacaggtggaaaaaccaaaaatgacctatatta 429  Q
    ||||||||||| || |||||||||||||||||||||||    
T  35434068 tattttacaggagggaaaaccaaaaatgacctatatta 35434105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Original strand, 39846577 - 39846613
Alignment:
Q  392 tattttacaggtggaaaaaccaaaaatgacctatatta 429  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  39846577 tattttacagg-ggaaaaaccaaaaatgacctatatta 39846613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 429
Target Start/End: Original strand, 27760518 - 27760554
Alignment:
Q  393 attttacaggtggaaaaaccaaaaatgacctatatta 429  Q
    |||||||||| ||||||||| ||||||||||||||||    
T  27760518 attttacaggaggaaaaaccgaaaatgacctatatta 27760554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 429
Target Start/End: Original strand, 34062335 - 34062371
Alignment:
Q  393 attttacaggtggaaaaaccaaaaatgacctatatta 429  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  34062335 attttacagggggaaaaaccaaaagtgacctatatta 34062371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Original strand, 18544002 - 18544039
Alignment:
Q  392 tattttacaggtggaaaaaccaaaaatgacctatatta 429  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  18544002 tattttacagggggaaaaacaaaaaatgacctatatta 18544039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Complemental strand, 23045228 - 23045191
Alignment:
Q  392 tattttacaggtggaaaaaccaaaaatgacctatatta 429  Q
    ||||||||||| || |||||||||||||||||||||||    
T  23045228 tattttacaggggggaaaaccaaaaatgacctatatta 23045191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Complemental strand, 31108408 - 31108371
Alignment:
Q  392 tattttacaggtggaaaaaccaaaaatgacctatatta 429  Q
    ||||||||||| || |||||||||||||||||||||||    
T  31108408 tattttacaggggggaaaaccaaaaatgacctatatta 31108371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Original strand, 35337132 - 35337168
Alignment:
Q  392 tattttacaggtggaaaaaccaaaaatgacctatatta 429  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  35337132 tattttacagg-ggaaaaaccaaaaatgacctatatta 35337168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Original strand, 36944226 - 36944263
Alignment:
Q  392 tattttacaggtggaaaaaccaaaaatgacctatatta 429  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  36944226 tattttacaggtgggaaaacaaaaaatgacctatatta 36944263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 429
Target Start/End: Complemental strand, 30371445 - 30371409
Alignment:
Q  393 attttacaggtggaaaaaccaaaaatgacctatatta 429  Q
    |||||||||| || |||||||||||||||||||||||    
T  30371445 attttacaggggggaaaaccaaaaatgacctatatta 30371409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Original strand, 15961737 - 15961774
Alignment:
Q  392 tattttacaggtggaaaaaccaaaaatgacctatatta 429  Q
    ||||||||||| || |||||||||||||||||||||||    
T  15961737 tattttacaggggggaaaaccaaaaatgacctatatta 15961774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Complemental strand, 24730118 - 24730081
Alignment:
Q  392 tattttacaggtggaaaaaccaaaaatgacctatatta 429  Q
    |||||||||||  |||||||||||||||||||||||||    
T  24730118 tattttacagggagaaaaaccaaaaatgacctatatta 24730081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Complemental strand, 46208261 - 46208224
Alignment:
Q  392 tattttacaggtggaaaaaccaaaaatgacctatatta 429  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  46208261 tattttacagggggaaaaacaaaaaatgacctatatta 46208224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Original strand, 50721922 - 50721959
Alignment:
Q  392 tattttacaggtggaaaaaccaaaaatgacctatatta 429  Q
    ||||||||||| || |||||||||||||||||||||||    
T  50721922 tattttacaggggggaaaaccaaaaatgacctatatta 50721959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Complemental strand, 51809817 - 51809780
Alignment:
Q  392 tattttacaggtggaaaaaccaaaaatgacctatatta 429  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  51809817 tattttacagggggaaaaaccaaaaataacctatatta 51809780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University