View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21338_low_8 (Length: 482)
Name: NF21338_low_8
Description: NF21338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21338_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 14 - 422
Target Start/End: Original strand, 16921672 - 16922086
Alignment:
| Q |
14 |
agaagaagttcgtgtagaagtctagaaagaattggcaactgagtttaaagaactacaagaccagatatcatgcttcaaaacaattgttgacaaatttatt |
113 |
Q |
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| T |
16921672 |
agaagaagctcgtgtagaagtccagaaagaattggcaactgagtttaaagagctacaagaccagatatcatgcttcaaaacaattgttgacaaatttatt |
16921771 |
T |
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| Q |
114 |
gaagagagtgaagaaaggaccaaggcagaaaat--------aatttctacaatgcataaaggagttgaaaaagtttgaaaactatatatcgaatttgaag |
205 |
Q |
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| T |
16921772 |
gaagagagtgaagaaaggaccagggcagaaaatgagtttataatttctacaatgcataaaggagctgaaaaagtttgaaaactatatgtcgaatttgaag |
16921871 |
T |
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| Q |
206 |
cttgtgatctttgccatgtttgtttttgtggttttagctctcattnnnnnnnttcaactttgataatttgataagtggtggaagacttttgagttggccg |
305 |
Q |
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| T |
16921872 |
cttgtgatctttaccatgtttgtttttgtggttttagctctcattaaaaaa-tccaactttgataatttgataagtggttgaagacttttgagctggccg |
16921970 |
T |
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| Q |
306 |
cgaggaaggatgaagaaattgcaggtgtggtaggaagaagatgaatgttcttaaa---tgtgtattttgttatattttatgttttaattattaatgtatt |
402 |
Q |
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| T |
16921971 |
----gaaggatgaagaaattgcaggtatggtaggaagaagatgaatgttcttaaacaatatgtattttgttatattttatgttttaattattaatgtatt |
16922066 |
T |
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| Q |
403 |
tgcatgaggttttcaaaatg |
422 |
Q |
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| T |
16922067 |
tgcatgaggttttcaaaatg |
16922086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 420 - 463
Target Start/End: Original strand, 16922108 - 16922151
Alignment:
| Q |
420 |
atgaaccaaaacaacttctctttggtggagataaaggttgatca |
463 |
Q |
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| T |
16922108 |
atgaaccaaaacaacttctctttgatggagataaaggttgatca |
16922151 |
T |
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