View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21338_low_9 (Length: 475)
Name: NF21338_low_9
Description: NF21338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21338_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 14 - 460
Target Start/End: Original strand, 33120722 - 33121168
Alignment:
| Q |
14 |
agatgaatatgcaatattatttaattaaacttacgattcagtgatgaggcaatctaactgagtaacaattgcagcaatagtgatgatggtccagtaaaca |
113 |
Q |
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| T |
33120722 |
agatgaataaacgatattaattaataaaacttacgattcagtgatgaggcaatctaactgagtaacaattgcagcaatagtgatgatggtccagtaaaca |
33120821 |
T |
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| Q |
114 |
tcaacaggaatttgttcatatgcaagttccaaagcaggaacaacctttgtgtcatacctatcattaaggtaatccaattcaagtataaattcaatcactt |
213 |
Q |
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| T |
33120822 |
tcaacaggaatttgttcatatgcaagttccaaagcaggaacgacctttgtgtcatacctatcattaaggtaatccaattcaagtataaattcaatcactt |
33120921 |
T |
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| Q |
214 |
gcaacgtgattttcaccaaactattaagctcggtgatggcttgacgatgtttttgaattgctgcaggctttgctaggatcggaactcgtttcagcaaagc |
313 |
Q |
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| T |
33120922 |
gcaacgtgattttcaccaaactattaagctcggtgatagcttgacggtgtttttgaattgctgcaggctttgctaggatcggaactcgtttcagcaaagc |
33121021 |
T |
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| Q |
314 |
cacagatttggcaagtgggtctgttgaaagatgttgttcaagtaaccagaattcaccaaattcaagtgcaaatgcagaaagtgtaagaactgcttttgct |
413 |
Q |
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| T |
33121022 |
cacagatttggcaagtgggtctgttgaaagatgttgttcaagtaaccagaattcaccaaattcaagtgcaaatgcagaaagtgtaagaactgcttttgct |
33121121 |
T |
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| Q |
414 |
tcccagtcatagtgtgaaagcttgttcagtatggctagagttgtttt |
460 |
Q |
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| T |
33121122 |
tcccagtcatagtgtgaaagcttgttcagtatggctagagttgtttt |
33121168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 35 - 130
Target Start/End: Complemental strand, 33139440 - 33139345
Alignment:
| Q |
35 |
taattaaacttacgattcagtgatgaggcaatctaactgagtaacaattgcagcaatagtgatgatggtccagtaaacatcaacaggaatttgttc |
130 |
Q |
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||||||||||||||| | |||| |||| || || |||||||||||||||||| |||| |||||||| ||| || ||||||||||| | |||||| |
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| T |
33139440 |
taattaaacttacgaattagtggtgagacattcaaactgagtaacaattgcaacaatggtgatgataacccaatatacatcaacagggaattgttc |
33139345 |
T |
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