View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21339_high_1 (Length: 596)
Name: NF21339_high_1
Description: NF21339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21339_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 530; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 9 - 579
Target Start/End: Original strand, 5949127 - 5949697
Alignment:
| Q |
9 |
acatcatcaaattttgtgcgagacccaatgaatcagtggacgcgatttttaatatatcgagactcgttcaaattgcaacaaaagtacaaaaatacagtga |
108 |
Q |
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| T |
5949127 |
acatcatcaaattttgtgtgagacccaatgaatcagtggacgcgatttttaatatatcgagactcgttcaaattgcaacaaaagtacaaaaatacagtga |
5949226 |
T |
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| Q |
109 |
aatgtgtgttagagagtgtttttcaaaatttctattatttataattaaatttttctctttgttggtctatgcagcatgttaaattaaagtatataattca |
208 |
Q |
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| T |
5949227 |
aatgtgtgttagagagtgtttttcaaaatttctattatttataattaaatttttgtctttgttggtctatgcagcatgttaaattaaagtatataattca |
5949326 |
T |
|
| Q |
209 |
tgttggtgattagnnnnnnncaacatttgtggttttgatgcagtttccattactttctagaagtggactactaaagaaactaattgcagagtccacaagt |
308 |
Q |
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| T |
5949327 |
tgttggtgattagtttttttcaacatttgtgattttgatgcagtttccattactttctagaagtggactactaaagaaactaattgcagagtccacaagt |
5949426 |
T |
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| Q |
309 |
gaggatggatcaagtagtattttgcaacttcatgatgttcctggtggagccaaaacatttgagctcataacaaaattttgctatggtgcgaaattagaaa |
408 |
Q |
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| T |
5949427 |
gaggatggatcaagtagtattttgcaacttcatgatgttcctggtggagccaaaacatttgagctcataacaaaattttgctatggtgtgaaattagaaa |
5949526 |
T |
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| Q |
409 |
tcacagcattgaatgtagttagtctaagatgtgcagcagagcatctccaaatgactgaaaactatggtgcagacaatcttattggttacacagaatcttt |
508 |
Q |
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| T |
5949527 |
tcacagcattgaatgtagttagtctaagatgtgcagcagagcatctccaaatgactgaaaactatggtgcagacaatcttattggttacacagaatcttt |
5949626 |
T |
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| Q |
509 |
tctaaatgaagttttcagcaattggccagactccatcaaagcgctcgagacgtgcgaggaagtgcaaaact |
579 |
Q |
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| T |
5949627 |
tctaaatgaagttttcagcaattggccagactccatcaaagcgctcgagacatgcgaggaagtgcaaaact |
5949697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 108; Significance: 6e-54; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 250 - 477
Target Start/End: Complemental strand, 28321551 - 28321324
Alignment:
| Q |
250 |
agtttccattactttctagaagtggactactaaagaaactaattgcagagtccacaagtgaggatggatcaagtagtattttgcaacttcatgatgttcc |
349 |
Q |
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| T |
28321551 |
agtttccattgctctctagaagtggattactaaagaaactttttgctgactccacaaatgaagatggatcaaattctattttacaacttcatgatgtacc |
28321452 |
T |
|
| Q |
350 |
tggtggagccaaaacatttgagctcataacaaaattttgctatggtgcgaaattagaaatcacagcattgaatgtagttagtctaagatgtgcagcagag |
449 |
Q |
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| T |
28321451 |
tggtggagacaaaacatttgagatcataacaaagttttgctatggtgtaaaactagaaatcacaccattaaatgtggttagtctaagatgtgcagcagaa |
28321352 |
T |
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| Q |
450 |
catctccaaatgactgaaaactatggtg |
477 |
Q |
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|| | ||||||| ||| || ||||||| |
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| T |
28321351 |
tatttacaaatgaatgagaattatggtg |
28321324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 514 - 550
Target Start/End: Complemental strand, 28321287 - 28321251
Alignment:
| Q |
514 |
atgaagttttcagcaattggccagactccatcaaagc |
550 |
Q |
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| T |
28321287 |
atgaagttttcagcaattggccagactcaataaaagc |
28321251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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