View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21339_high_20 (Length: 267)
Name: NF21339_high_20
Description: NF21339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21339_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 141 - 247
Target Start/End: Complemental strand, 48569090 - 48568984
Alignment:
| Q |
141 |
ccacaatgaatgtttaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacaggtttcccgctcggagccccataggtatctc |
240 |
Q |
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| T |
48569090 |
ccacaatgaatgttcaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacaggtttcccgctcggagccccataggtatctc |
48568991 |
T |
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| Q |
241 |
catagag |
247 |
Q |
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||||||| |
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| T |
48568990 |
catagag |
48568984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 48569201 - 48569141
Alignment:
| Q |
22 |
aggtattggagagatctcctatgactgatttcaatgcagactcagcacactgcaagatttc |
82 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48569201 |
aggtattggagagatctcctatgactgatttcaatgcagactcagcacactgcaagatttc |
48569141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 10822202 - 10822286
Alignment:
| Q |
148 |
gaatgtttaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacaggtttcccgctcggagccccata |
232 |
Q |
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| T |
10822202 |
gaatgttcaccttacgcatagtttcctctgattcatatactttttctggaaaatgccacacaggctttccacttggagccccata |
10822286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 232
Target Start/End: Complemental strand, 36145194 - 36145110
Alignment:
| Q |
148 |
gaatgtttaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacaggtttcccgctcggagccccata |
232 |
Q |
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||||||| |||||||||||||| |||||||||||||| ||| |||||||||||||||||||| || || || ||||||||||| |
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| T |
36145194 |
gaatgttcaccttacgcatggtatcctctgattcatatactttttctggaaaatgccacacaggctttccacttggagccccata |
36145110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 10821885 - 10821937
Alignment:
| Q |
24 |
gtattggagagatctcctatgactgatttcaatgcagactcagcacactgcaa |
76 |
Q |
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||||| || |||||||||| |||||||||||| ||||| || ||||||||||| |
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| T |
10821885 |
gtattcgaaagatctcctaagactgatttcaaggcagattctgcacactgcaa |
10821937 |
T |
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