View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21339_high_24 (Length: 239)
Name: NF21339_high_24
Description: NF21339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21339_high_24 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 3 - 221
Target Start/End: Complemental strand, 5771602 - 5771384
Alignment:
| Q |
3 |
aagctgtttggattaagaaaagggttagtacagaaaatgatttcacaagctcagataagccaatatccttaaatgatttcctttctatattctcttcctc |
102 |
Q |
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| T |
5771602 |
aagctgtttggattaagaaaagggttagtacagaaaatgatttcacaagctcagataagccaatatccttaaatgatttcctttctatattctcttcctc |
5771503 |
T |
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| Q |
103 |
cattctcagtttctaatctatgattaaatatgagaaatttaatcaatcatacaaaggacgaacacatatacatatatgagaaaaattttgacaaaaaaga |
202 |
Q |
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| T |
5771502 |
cattctcagtttctaatctatgattaaatatgagaaatttaatcaatcatacaaagaacgaacacatatacatatatgagaaaaattttgacaaaaaaga |
5771403 |
T |
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| Q |
203 |
agacaatgtatgtcgaaca |
221 |
Q |
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| T |
5771402 |
agacaatgtatgtcgaaca |
5771384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 53 - 204
Target Start/End: Complemental strand, 5765617 - 5765471
Alignment:
| Q |
53 |
tcagataagccaatatccttaaatgatttcctttctatattctcttcctccattctcagtttctaatctatgattaaatatgagaaatttaatcaatcat |
152 |
Q |
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| T |
5765617 |
tcagataagccaagatccttaaatgatttcatttctatattctctt-----attctcagtttctaacctatgattaaatatgagaaatttaatcaattat |
5765523 |
T |
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| Q |
153 |
acaaaggacgaacacatatacatatatgagaaaaattttgacaaaaaagaag |
204 |
Q |
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| T |
5765522 |
acaaaggacgaacacaagtacatatatgaaaaaaaaattgacaaaaaagaag |
5765471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 118
Target Start/End: Original strand, 20525341 - 20525401
Alignment:
| Q |
58 |
taagccaatatccttaaatgatttcctttctatattctcttcctccattctcagtttctaa |
118 |
Q |
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| T |
20525341 |
taagccgagatccttaaatgatttcatttctttgttctcttcctccattctcagtttctaa |
20525401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 118
Target Start/End: Complemental strand, 30642745 - 30642685
Alignment:
| Q |
58 |
taagccaatatccttaaatgatttcctttctatattctcttcctccattctcagtttctaa |
118 |
Q |
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| T |
30642745 |
taagccgagatccttaaatgatttcatttctttgttctcttcctccattctcagtttctaa |
30642685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 121
Target Start/End: Original strand, 12119770 - 12119833
Alignment:
| Q |
58 |
taagccaatatccttaaatgatttcctttctatattctcttcctccattctcagtttctaatct |
121 |
Q |
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| T |
12119770 |
taagccaagatctttaaatgatttgatttctttattctcttcctccattatcactttctaatct |
12119833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 130
Target Start/End: Complemental strand, 11923081 - 11923000
Alignment:
| Q |
51 |
gctcagataagccaatatccttaaatgatttcctttctatattctcttcctcc--attctcagtttctaatctatgattaaa |
130 |
Q |
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|||||||||| || | |||||||||||||||| ||||| |||||||||| ||| |||||||||| |||| |||||| |||| |
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| T |
11923081 |
gctcagataaacccagatccttaaatgatttcatttctttattctcttcttccatattctcagttactaacctatgaataaa |
11923000 |
T |
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