View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21339_high_3 (Length: 485)
Name: NF21339_high_3
Description: NF21339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21339_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 27 - 475
Target Start/End: Original strand, 45783566 - 45784008
Alignment:
| Q |
27 |
aagaaagataaacattatattcaatgagatnnnnnnnnnn-gctaggagaacaatatacaatgatataataaagaaattaccgcaaccaaaagatgggag |
125 |
Q |
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| T |
45783566 |
aagaaagataaacattatattcaatgagataaaaaaaagaagctaggagaacaatatacaatgatataataaagaaattaccgcaaccaaaagatgggag |
45783665 |
T |
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| Q |
126 |
gttgcactgagaagtaagttgagaagcaattctgagagtgttacaaagacagtcagggttggttgattgaagtgcagtgcagcaatcaggacttgggtta |
225 |
Q |
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| T |
45783666 |
gttgcactgagaagtaagttgagaagcaattctgagagtgttacaaagacagtcagggttggttgattgaagtgcagtgcagcaatcaggacttgggtta |
45783765 |
T |
|
| Q |
226 |
gtgttgggtgaaccaggaacaacaaatggtgcacaaacattcagattgctaagctgagttggacaagtagtttgtgcctcacccatttccattttggtcc |
325 |
Q |
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| T |
45783766 |
gtgttgggtgaaccaggaacaacaaatggtgcacaaacattcagattgctaagctgagttggacaagtagtttgtgcctcacccatttccattttggtcc |
45783865 |
T |
|
| Q |
326 |
ccaatgccacaaccaatacaagaaccaatgcaacttgacacctcattgatactggtcctgccatgatttttcttgttgtgatataatatgataagtaata |
425 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
45783866 |
ccaatgccacaaccaatacaagaaccaatgcaacttgacacctcattgatactggtcctgccatgatttttc---ttgtgatataatatgataagtaata |
45783962 |
T |
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| Q |
426 |
tcctcaatttatagttcatttctgtattgaaggaagagtatatgattctt |
475 |
Q |
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| T |
45783963 |
tcctcaatttatagttcatttctgtatt----gaagagtatatgattctt |
45784008 |
T |
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