View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21339_high_9 (Length: 400)
Name: NF21339_high_9
Description: NF21339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21339_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 63 - 346
Target Start/End: Complemental strand, 12150568 - 12150285
Alignment:
| Q |
63 |
tcctttagaagcagtgtttgaagagggtagccttccagagaatgcttacaatcttgtgaaggatgaagaatattgtggagagattaaggtggctctcaca |
162 |
Q |
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| T |
12150568 |
tcctttagaagcagtgtttgaagagggtagccttccagagaatgcttacaatcttgtgaaggatgaagaatattgtggagagattaaggttgctctcact |
12150469 |
T |
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| Q |
163 |
tttacaccagaggtaataaggctatataatctctttttctatattatgtttcttcaaagttttatgcatatttttctccctattaaaatgtactatcaat |
262 |
Q |
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| T |
12150468 |
tttacacctgaggtaataaggcaatataatctctttttctatattatttttcttcaaagttttatgcatatttttctccctattaaaatgtactatcaat |
12150369 |
T |
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| Q |
263 |
tattggttgcagagaaatgatgatcaaagttacaatgaagaggaggagactggtggatggaaagaatcagctagtgacttttga |
346 |
Q |
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| T |
12150368 |
tattggttgcagagaaatgatgatcagagttacaatgaagaggaggagactggtggatggaaagaatcagctagtgacttttga |
12150285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 63 - 346
Target Start/End: Complemental strand, 12143583 - 12143302
Alignment:
| Q |
63 |
tcctttagaagcagtgtttgaagagggtagccttccagagaatgcttacaatcttgtgaaggatgaagaatattgtggagagattaaggtggctctcaca |
162 |
Q |
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| T |
12143583 |
tcctttagagacagtgattcaagagggtagcgttccagagaattcttacaaacttgtgaaagatgaaaaatattgtggagaggttaaggttgctctcact |
12143484 |
T |
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| Q |
163 |
tttacaccagaggtaataaggctatataatctctttttctatattatgtttcttcaaagttttatgcatatttttctccctattaaaatgtactatcaat |
262 |
Q |
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| T |
12143483 |
tttacacctgaggtaataaggctatttaatctctttttc--tattatttttcttcataattttatgcatatttttctccctattaaaatgtactatcaat |
12143386 |
T |
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| Q |
263 |
tattggttgcagagaaatgatgatcaaagttacaatgaagaggaggagactggtggatggaaagaatcagctagtgacttttga |
346 |
Q |
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| T |
12143385 |
tattggttgcagagaaactacgaacggagttacaatcaagaggaggagaccggaggatggaaacaatcggctagggacttttga |
12143302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 341 - 390
Target Start/End: Complemental strand, 12150199 - 12150150
Alignment:
| Q |
341 |
ttttgagaacatttaggaactttaatcattgtgttttctggtgtgatgat |
390 |
Q |
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| T |
12150199 |
ttttgagaacatttaggaactttaatcattgtgttttctggtgtgatgat |
12150150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 12150568 - 12150614
Alignment:
| Q |
18 |
aattctagagatagaaatgaatgaatatttagtatgccaaaattgtc |
64 |
Q |
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| T |
12150568 |
aattctagagatagaaatgaatgaatatttagtatgccaaaattgtc |
12150614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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