View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21339_low_10 (Length: 391)
Name: NF21339_low_10
Description: NF21339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21339_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 22 - 376
Target Start/End: Complemental strand, 27256105 - 27255754
Alignment:
| Q |
22 |
agttcttagtctgtgtacaacttctaccaaaatatttgataactaactctcatttttcatcaaaatatttgttcttagtttgtttttcaaatgctaatgc |
121 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27256105 |
agttcttagtctgtgtac---ttctaccaaaatatttgataactaactctcatttttcatcaaaatatttgttcttagtttgtttttcaaatgctaatgc |
27256009 |
T |
|
| Q |
122 |
ttctaaagtttgtttttctacagtcacataacaccttcaatatcaagaagttagcaagcaatattgtttcactttcggttacacgcgaagctttgatttt |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27256008 |
ttctaaagtttgtttttctacagtcacataacaccttcaatatcaagaagttagcaagcaatattgtttcactttcggttacacgcgaagctttgatttt |
27255909 |
T |
|
| Q |
222 |
tagtggtatgaattttactttctcttccttattattaacttttgtctatcctcatgtttttcatttttgcattatacatgcgaatacgattataaccctc |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27255908 |
tagtggtatgaattttactttctcttccttattattaacttttgtctatcctcatgtttttcatttttgcattatacatgcgaatacgattataaccctc |
27255809 |
T |
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| Q |
322 |
ttaacacaaatatagagcatgacatgttgtctataattgtaaaatcattgtttat |
376 |
Q |
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||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
27255808 |
ttaacgcaaatatagagcatgaaatgttgtctataattgtaaaatcattgtttat |
27255754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 16 - 376
Target Start/End: Complemental strand, 21200080 - 21199734
Alignment:
| Q |
16 |
ctggtaagttcttagtctgtgtacaacttctaccaaaatatttgataactaactctcatttttcatcaaaatatttgttcttagtttgtttttcaaatgc |
115 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21200080 |
ctggtaagttcttagtctgtgtac---ttctaccaaaatatttgataactaactctcatttttcatcaaaatatttgttcttagtttgtttttcaaatgc |
21199984 |
T |
|
| Q |
116 |
taatgcttctaaagtttgtttttctacagtcacataacaccttcaatatcaagaagttagcaagcaatattgtttcactttcggttacacgcgaagcttt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
21199983 |
taatgcttctaaagtttgtttttctacagtcacataacaccttcaaaatcaag-----------caatattgtttcactttcggttacatgcgaagcttt |
21199895 |
T |
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| Q |
216 |
gatttttagtggtatgaattttactttctcttccttattattaacttttgtctatcctcatgtttttcatttttgcattatacatgcgaatacgattata |
315 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
21199894 |
gatttttagtggtatgaattttactttctcctccttattattaacttttgtctatcctcatttttttcatttttgcattatacatgcgaatacgattata |
21199795 |
T |
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| Q |
316 |
accctcttaacacaaatatagagcatgacatgttgtctataattgtaaaatcattgtttat |
376 |
Q |
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||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
21199794 |
accctcttaacgcaaatatagagcatgaaatgttgtctataattgtaaaatcattgtttat |
21199734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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