View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21339_low_11 (Length: 360)
Name: NF21339_low_11
Description: NF21339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21339_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 113 - 271
Target Start/End: Original strand, 35604904 - 35605062
Alignment:
| Q |
113 |
ttagtgaataacccatcaactcaaattactaaaacccatatcaattccaaaagaaattcaaatctgcatcccctttctcagtgagaaattcctcaatctc |
212 |
Q |
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| T |
35604904 |
ttagtgaataacccatcaactcaaattactaaaacccatatcaattccaaaagaaattcaaatctgcatcccctttctcagtgagaaattcctcaatctc |
35605003 |
T |
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| Q |
213 |
agtaaaaattccatcaactccagatcaaccctcacccatggctgaccctatcctcgtcg |
271 |
Q |
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| T |
35605004 |
agtaaaaattccatcaactccaaatcaaccctcacccatggctgaccctatcctcgtcg |
35605062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 35604792 - 35604838
Alignment:
| Q |
1 |
atccagcaacatacaaggaaaaatccacaaacaaacacatatcagtg |
47 |
Q |
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| T |
35604792 |
atccagcaacatataaggaaaaatccacaaacaaacacatatcagtg |
35604838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 7e-37; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 152 - 266
Target Start/End: Complemental strand, 22271873 - 22271759
Alignment:
| Q |
152 |
atcaattccaaaagaaattcaaatctgcatcccctttctcagtgagaaattcctcaatctcagtaaaaattccatcaactccagatcaaccctcacccat |
251 |
Q |
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|||||||||||||||||||||||| |||||| || ||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||| |||| |
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| T |
22271873 |
atcaattccaaaagaaattcaaatttgcatctccattctcagtgagaaattcctcaatgtcagtaaaaattccatttactccaaatcaaccctcagccat |
22271774 |
T |
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| Q |
252 |
ggctgaccctatcct |
266 |
Q |
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||||| ||||||||| |
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| T |
22271773 |
ggctggccctatcct |
22271759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 22272004 - 22271966
Alignment:
| Q |
1 |
atccagcaacatacaaggaaaaatccacaaacaaacaca |
39 |
Q |
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||||||||||||||||| ||||||||||| ||||||||| |
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| T |
22272004 |
atccagcaacatacaagaaaaaatccacagacaaacaca |
22271966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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