View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21339_low_13 (Length: 346)

Name: NF21339_low_13
Description: NF21339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21339_low_13
NF21339_low_13
[»] chr7 (3 HSPs)
chr7 (76-330)||(12104188-12104445)
chr7 (262-330)||(12094037-12094105)
chr7 (1-51)||(46274946-46274996)
[»] chr6 (3 HSPs)
chr6 (1-33)||(1266822-1266854)
chr6 (1-38)||(9949231-9949268)
chr6 (2-38)||(31444371-31444407)
[»] scaffold0024 (1 HSPs)
scaffold0024 (1-38)||(160459-160496)
[»] chr5 (2 HSPs)
chr5 (1-38)||(30527993-30528030)
chr5 (1-38)||(30568333-30568370)
[»] chr3 (2 HSPs)
chr3 (5-38)||(8792813-8792846)
chr3 (1-53)||(11751208-11751260)
[»] chr8 (1 HSPs)
chr8 (1-33)||(24242665-24242697)


Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 76 - 330
Target Start/End: Original strand, 12104188 - 12104445
Alignment:
Q  76 gacgtattttctccatatctttgacgtatcaataagcaagactttaaaagcaagcaataaggtcaaatttct-cctatatataaagggaacttctatact 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  12104188 gacgtattttctccatatctttgacgtatcaataagcaagactttaaaagcaagcaataaggtcaaatttctccctatatataaagggaacttctatact 12104287  T
Q  175 agcggcaaaaccctaaacgttttcttgctctatgtggt---nnnnnnnnnngcaagaaaagaatccttgatcaagaataccgcaccatcttaacagaatg 271  Q
    ||||||||||||||||||||||||||||||||||||||              | ||||||||||||||||||||||||||||||||||||||||||||||    
T  12104288 agcggcaaaaccctaaacgttttcttgctctatgtggtaaaaaaaaaaaaaacgagaaaagaatccttgatcaagaataccgcaccatcttaacagaatg 12104387  T
Q  272 tcttcgctggaaacttcaacggcaacggtggcggtagatatgatcagcaatttatcaga 330  Q
     |||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  12104388 ccttc-ccggaaacttcaatggcaacggtggcggtagatatgatcagcaatttatcaga 12104445  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 262 - 330
Target Start/End: Original strand, 12094037 - 12094105
Alignment:
Q  262 taacagaatgtcttcgctggaaacttcaacggcaacggtggcggtagatatgatcagcaatttatcaga 330  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||    
T  12094037 taacagaatgtctttgctggaaacttcaacggcaccggtggcggtagataggatcagcaatttaccaga 12094105  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 46274996 - 46274946
Alignment:
Q  1 tccggcctaacaatttcggcatttttaccggttcagcttgaccttatggat 51  Q
    |||| |||||||||||||||||||||||||||| |||| || |||||||||    
T  46274996 tccgacctaacaatttcggcatttttaccggttgagctagaacttatggat 46274946  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 1266822 - 1266854
Alignment:
Q  1 tccggcctaacaatttcggcatttttaccggtt 33  Q
    |||||||||||||||||||||||||||||||||    
T  1266822 tccggcctaacaatttcggcatttttaccggtt 1266854  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 9949231 - 9949268
Alignment:
Q  1 tccggcctaacaatttcggcatttttaccggttcagct 38  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  9949231 tccggcctaacaatttcggcatttttaccagttgagct 9949268  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 31444371 - 31444407
Alignment:
Q  2 ccggcctaacaatttcggcatttttaccggttcagct 38  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  31444371 ccggcctaacaatttcggcatttttgccggttgagct 31444407  T

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Target: scaffold0024 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 160496 - 160459
Alignment:
Q  1 tccggcctaacaatttcggcatttttaccggttcagct 38  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  160496 tccggcctaacaatttcggcatttttaccagttgagct 160459  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 30528030 - 30527993
Alignment:
Q  1 tccggcctaacaatttcggcatttttaccggttcagct 38  Q
    ||||||||||||||||||||||||| ||||||| ||||    
T  30528030 tccggcctaacaatttcggcattttcaccggttgagct 30527993  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 30568370 - 30568333
Alignment:
Q  1 tccggcctaacaatttcggcatttttaccggttcagct 38  Q
    ||||||||||||||||||||||||| ||||||| ||||    
T  30568370 tccggcctaacaatttcggcattttcaccggttgagct 30568333  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 8792813 - 8792846
Alignment:
Q  5 gcctaacaatttcggcatttttaccggttcagct 38  Q
    ||||||||||||||||||||||||||||| ||||    
T  8792813 gcctaacaatttcggcatttttaccggttgagct 8792846  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 11751260 - 11751208
Alignment:
Q  1 tccggcctaacaatttcggcatttttaccggttcagcttgaccttatggatcc 53  Q
    |||||||||||||||||||||||||| || ||| |||| |  |||||||||||    
T  11751260 tccggcctaacaatttcggcatttttgccagttgagctaggacttatggatcc 11751208  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 24242665 - 24242697
Alignment:
Q  1 tccggcctaacaatttcggcatttttaccggtt 33  Q
    |||||||||||||||||||||||||| ||||||    
T  24242665 tccggcctaacaatttcggcatttttgccggtt 24242697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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