View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21339_low_14 (Length: 344)

Name: NF21339_low_14
Description: NF21339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21339_low_14
NF21339_low_14
[»] chr4 (2 HSPs)
chr4 (187-328)||(377991-378131)
chr4 (12-98)||(378222-378308)
[»] chr3 (8 HSPs)
chr3 (187-327)||(50837247-50837387)
chr3 (187-327)||(50838467-50838607)
chr3 (12-78)||(50837087-50837153)
chr3 (12-78)||(50838701-50838767)
chr3 (205-258)||(50836469-50836522)
chr3 (205-258)||(50839331-50839384)
chr3 (269-327)||(26668245-26668303)
chr3 (206-255)||(40036864-40036913)
[»] chr2 (2 HSPs)
chr2 (271-327)||(29520195-29520251)
chr2 (205-254)||(29520280-29520329)
[»] chr8 (1 HSPs)
chr8 (206-255)||(32923868-32923917)
[»] chr7 (1 HSPs)
chr7 (206-255)||(17356743-17356792)
[»] chr5 (1 HSPs)
chr5 (206-255)||(973970-974019)


Alignment Details
Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 187 - 328
Target Start/End: Complemental strand, 378131 - 377991
Alignment:
Q  187 ttaaatacttatttttgatgtgccacatggcatgtaacgattgggccacgtggcactctgttaattttgacannnnnnnnaacggcaaggaccaaaacca 286  Q
    ||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        ||||||||||||||||||||    
T  378131 ttaaatatttctttttgatgtgccacatggcatgtaacgattgggtcacgtggcactctgttaattttgaca-tttttttaacggcaaggaccaaaacca 378033  T
Q  287 tattttttctaaagtgcaaggactaaaaccaaaccaaaaaag 328  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  378032 tattttttctaaagtgcaaggactaaaaccaaactaaaaaag 377991  T

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Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 378308 - 378222
Alignment:
Q  12 gagaagaatagtttataattctgttgtaagagcataaatggtgatggtgatgatgtgggattgaaggggatgatgaacagtaagctc 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  378308 gagaagaatagtttataattctgttgtaagagcataaatggtgatggtgatgatgtgggattgaaggggatgatgaacagtaagctc 378222  T

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Target: chr3 (Bit Score: 89; Significance: 7e-43; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 187 - 327
Target Start/End: Original strand, 50837247 - 50837387
Alignment:
Q  187 ttaaatacttatttttgatgtgccacatggcatgtaacgattgggccacgtggcactctgttaattttgacannnnnnnnaacggcaaggaccaaaacca 286  Q
    ||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||        ||||||||||||||||||||    
T  50837247 ttaaatatttctttttgatgtggcacatggcatgtaacgattgggccacgtggcactctgtaaattttgacattttttttaacggcaaggaccaaaacca 50837346  T
Q  287 tattttttctaaagtgcaaggactaaaaccaaaccaaaaaa 327  Q
     || |||||||||||||||||||||||||||||| ||||||    
T  50837347 aatattttctaaagtgcaaggactaaaaccaaacaaaaaaa 50837387  T

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Target: chr3; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 187 - 327
Target Start/End: Complemental strand, 50838607 - 50838467
Alignment:
Q  187 ttaaatacttatttttgatgtgccacatggcatgtaacgattgggccacgtggcactctgttaattttgacannnnnnnnaacggcaaggaccaaaacca 286  Q
    ||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||        ||||||||||||||||||||    
T  50838607 ttaaatatttctttttgatgtggcacatggcatgtaacgattgggccacgtggcactctgtaaattttgacattttttttaacggcaaggaccaaaacca 50838508  T
Q  287 tattttttctaaagtgcaaggactaaaaccaaaccaaaaaa 327  Q
     || |||||||||||||||||||||||||||||| ||||||    
T  50838507 aatattttctaaagtgcaaggactaaaaccaaacaaaaaaa 50838467  T

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Target: chr3; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 50837087 - 50837153
Alignment:
Q  12 gagaagaatagtttataattctgttgtaagagcataaatggtgatggtgatgatgtgggattgaagg 78  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  50837087 gagaagaatagtttataattctcttgtaagagcataaatagtgatggtgatgatgtgggattgaagg 50837153  T

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Target: chr3; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 12 - 78
Target Start/End: Complemental strand, 50838767 - 50838701
Alignment:
Q  12 gagaagaatagtttataattctgttgtaagagcataaatggtgatggtgatgatgtgggattgaagg 78  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  50838767 gagaagaatagtttataattctcttgtaagagcataaatagtgatggtgatgatgtgggattgaagg 50838701  T

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Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 205 - 258
Target Start/End: Complemental strand, 50836522 - 50836469
Alignment:
Q  205 tgtgccacatggcatgtaacgattgggccacgtggcactctgttaattttgaca 258  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  50836522 tgtgccacatggcatgtaacgattgggccacgtggcactcagttaattttgaca 50836469  T

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Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 205 - 258
Target Start/End: Original strand, 50839331 - 50839384
Alignment:
Q  205 tgtgccacatggcatgtaacgattgggccacgtggcactctgttaattttgaca 258  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  50839331 tgtgccacatggcatgtaacgattgggccacgtggcactcagttaattttgaca 50839384  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 327
Target Start/End: Original strand, 26668245 - 26668303
Alignment:
Q  269 cggcaaggaccaaaaccatattttttctaaagtgcaaggactaaaaccaaaccaaaaaa 327  Q
    ||||| |||||||||| || | |||| ||||||||||||||||||||||||| ||||||    
T  26668245 cggcagggaccaaaactatttcttttataaagtgcaaggactaaaaccaaacaaaaaaa 26668303  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 40036864 - 40036913
Alignment:
Q  206 gtgccacatggcatgtaacgattgggccacgtggcactctgttaattttg 255  Q
    |||||||||||| || || ||||||||||||||||||||||||| |||||    
T  40036864 gtgccacatggcgtgaaatgattgggccacgtggcactctgttagttttg 40036913  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 271 - 327
Target Start/End: Complemental strand, 29520251 - 29520195
Alignment:
Q  271 gcaaggaccaaaaccatattttttctaaagtgcaaggactaaaaccaaaccaaaaaa 327  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||    
T  29520251 gcaaggaccaaaaccaaattttttataaagtgcaaggactaaaaccaaacaaaaaaa 29520195  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 29520329 - 29520280
Alignment:
Q  205 tgtgccacatggcatgtaacgattgggccacgtggcactctgttaatttt 254  Q
    |||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  29520329 tgtgccacatggcatgtaacgattgggccacgtggcactcggttattttt 29520280  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 255
Target Start/End: Complemental strand, 32923917 - 32923868
Alignment:
Q  206 gtgccacatggcatgtaacgattgggccacgtggcactctgttaattttg 255  Q
    |||||||||||| || || |||||||||||||||||||| |||| |||||    
T  32923917 gtgccacatggcgtgaaatgattgggccacgtggcactccgttagttttg 32923868  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 255
Target Start/End: Complemental strand, 17356792 - 17356743
Alignment:
Q  206 gtgccacatggcatgtaacgattgggccacgtggcactctgttaattttg 255  Q
    ||||||| |||| || || ||||||||||||||||||||||||| |||||    
T  17356792 gtgccacgtggcgtgaaatgattgggccacgtggcactctgttagttttg 17356743  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 255
Target Start/End: Complemental strand, 974019 - 973970
Alignment:
Q  206 gtgccacatggcatgtaacgattgggccacgtggcactctgttaattttg 255  Q
    |||||||||||| || || |||||||||||||||||||| |||| |||||    
T  974019 gtgccacatggcgtgaaatgattgggccacgtggcactccgttagttttg 973970  T

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