View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21339_low_2 (Length: 525)
Name: NF21339_low_2
Description: NF21339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21339_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 14 - 358
Target Start/End: Original strand, 38420900 - 38421239
Alignment:
| Q |
14 |
catcactgtcacaacaatggaaccccagttaaacattcttattattaattcaaacaattctatgatcaccttcaatgcaatgcaatggaatgcaaatttt |
113 |
Q |
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| T |
38420900 |
catcactgtcacaacaatggaaccccagttaaacattcttattattaattcaaacaattctatgatcaccttcaatgcaatgcaatggaatgcaaatttt |
38420999 |
T |
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| Q |
114 |
agtatgcatttgattaatttatatagtggtatgtatgtactaataattaatttaataagtgggtatnnnnnnnaggcttggatgattaagctactgtgga |
213 |
Q |
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| T |
38421000 |
agtatgcatttgattaatttatatagtggtatgtatgtactaataattaatttaataagtgggtat-ggggggaggcttggatgattaagctactgtgga |
38421098 |
T |
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| Q |
214 |
ttcacttccaattaatgtgcatgtgatgcttgtcacaaagattgtacttgtatttggattaagaataacttgcttcacatgataattagaattcagcttc |
313 |
Q |
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| T |
38421099 |
ttcactccc----aatgtgcatgtgatgcttgtcacaaagattgtacttgtatttggattaagaataacttgcttcacatgataattagaattcagcttc |
38421194 |
T |
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| Q |
314 |
caccatattattagtgtggctatgaagaaaggaatttataccaac |
358 |
Q |
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| T |
38421195 |
caccatattattagtgtggctttgaagaaaggaatttatagcaac |
38421239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 461 - 498
Target Start/End: Original strand, 38421460 - 38421497
Alignment:
| Q |
461 |
atgtctttatcatcaaagagtatatttaatgtatttta |
498 |
Q |
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| T |
38421460 |
atgtctttatcatcaaagagtatatttaatgtatttta |
38421497 |
T |
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