View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21339_low_20 (Length: 284)
Name: NF21339_low_20
Description: NF21339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21339_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 40839331 - 40839586
Alignment:
| Q |
18 |
aaggcaaaactaatctagcatagatagtataaaaatttgacccttgatcatgttgaatcgacatatctgacacattaaggccaatatcggtaggtaaaag |
117 |
Q |
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| T |
40839331 |
aaggcaaaactaatctagcatagatagtataaaaatttgacccttgatcatgttgaatcgacatatctgacacattaaggccaatatcggtaggtaaaag |
40839430 |
T |
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| Q |
118 |
actgcaacctcttttggttcctttagtaacatcataggtaccaactggcaaatatgtaccatggtatctgatccctatgattgcctttgttccaatcatt |
217 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40839431 |
actacaacctcttttggttcctttagtaacatcataggtaccaactggcaaatatgtaccatggtatctgatccctatgattgcctttgttccaatcatt |
40839530 |
T |
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| Q |
218 |
tcagccctattccctggattcacaccccatcctatccacccatccccttgacctat |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40839531 |
tcagccctattccctggattcacaccccatcctatccacccatccccttgacctat |
40839586 |
T |
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