View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21339_low_23 (Length: 261)
Name: NF21339_low_23
Description: NF21339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21339_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 15 - 242
Target Start/End: Original strand, 12151137 - 12151364
Alignment:
| Q |
15 |
tatcatcattattatagttgtccttttccattatctttagattgagctcagaagcattgtcagaaacagtgaaaagaaatgtctcattccattgagggtt |
114 |
Q |
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| T |
12151137 |
tatcatcattattatagttgtccttttccattatctttagattgagctcagaagcattgtcagaaacagtgaaaagaaatgtctcattccattgtgggtt |
12151236 |
T |
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| Q |
115 |
ggaaccagcacctgatattattcataaaacaataatcaaattaaccactagagaacaaaataacaaataagcaaatcaatattacttatgtttgtcagaa |
214 |
Q |
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| T |
12151237 |
agatccagcacctgatattattcataaaccaataatcaaattaaccactagagaacaaaataacaaataagcaaatcaatattacttatttttgtcagaa |
12151336 |
T |
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| Q |
215 |
ttttaccttcttgcacagtactcttgtg |
242 |
Q |
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| T |
12151337 |
ttttaccttcttgaacagtactcttgtg |
12151364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 7 - 153
Target Start/End: Original strand, 12143923 - 12144069
Alignment:
| Q |
7 |
tccaagaatatcatcattattatagttgtccttttccattatctttagattgagctcagaagcattgtcagaaacagtgaaaagaaatgtctcattccat |
106 |
Q |
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||||||| |||||||| | |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
12143923 |
tccaagattatcatcagcactatagttgtccttttccattatctttagattgagctcataagcagtgtcagaaacagtgaaaagaaatgtctcattccat |
12144022 |
T |
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| Q |
107 |
tgagggttggaaccagcacctgatattattcataaaacaataatcaa |
153 |
Q |
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| T |
12144023 |
tgagggttggatccagcacctgatattattcataatacaataatcaa |
12144069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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