View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21339_low_26 (Length: 237)

Name: NF21339_low_26
Description: NF21339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21339_low_26
NF21339_low_26
[»] chr5 (9 HSPs)
chr5 (1-225)||(13447062-13447286)
chr5 (4-225)||(13419511-13419732)
chr5 (4-225)||(13426402-13426623)
chr5 (6-223)||(13413168-13413385)
chr5 (4-223)||(13389015-13389234)
chr5 (151-225)||(13454015-13454089)
chr5 (144-223)||(13393562-13393641)
chr5 (4-98)||(13385194-13385288)
chr5 (3-97)||(13454143-13454237)
[»] chr4 (1 HSPs)
chr4 (131-205)||(47601353-47601427)


Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 13447286 - 13447062
Alignment:
Q  1 taaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgccgacgatattgagaattactgcac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  13447286 taaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgcgaaaattgtgccgacgatattgagaattactgcac 13447187  T
Q  101 caaatatactcaaacattcaatggtaagtctcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13447186 caaatatactcaaacattcaatggtaagtctcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgc 13447087  T
Q  201 attcctgatagcttacctcttgatg 225  Q
    |||||||||||||||||||||||||    
T  13447086 attcctgatagcttacctcttgatg 13447062  T

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Target: chr5; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 4 - 225
Target Start/End: Complemental strand, 13419732 - 13419511
Alignment:
Q  4 aaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgccgacgatattgagaattactgcaccaa 103  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||  |||||||||| |||||| |||||||||||||| | |     
T  13419732 aaaagtttaaagttggagacaaagttggtgtgggatacatggttgattcatgtcgttcatgccaaaattgtgctgacgatcttgagaattactgcccaac 13419633  T
Q  104 atatactcaaacattcaatggtaagtctcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcatt 203  Q
    || |||    ||||    ||  |||| ||||||||||||  |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  13419632 atttacagtcacatgtggtgcaaagtatcgtgatggcaccgtcacatatggaggttactccgactcaatggttgcagacgagcactttgtgattcgcatt 13419533  T
Q  204 cctgatagcttacctcttgatg 225  Q
    ||||||||||||||||||||||    
T  13419532 cctgatagcttacctcttgatg 13419511  T

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Target: chr5; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 4 - 225
Target Start/End: Complemental strand, 13426623 - 13426402
Alignment:
Q  4 aaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgccgacgatattgagaattactgcaccaa 103  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||| || ||| |||||||||||||| || |    
T  13426623 aaaagtttaaagttggagacaaagtaggagtgggatacatggttgattcatgtcgttcatgcgaaaattgtgcggaagatcttgagaattactgccccca 13426524  T
Q  104 atatactcaaacattcaatggtaagtctcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcatt 203  Q
    | | ||    ||||    || ||||| |||||||||||   |||| ||||||||||  |||||||||||||||||||| |||||||||||||||||||||    
T  13426523 acaaacagttacatgtggtgctaagtatcgtgatggcagcgtcacatatggaggttattccgactcaatggttgcagatgagcactttgtgattcgcatt 13426424  T
Q  204 cctgatagcttacctcttgatg 225  Q
    ||||||||||||||||||||||    
T  13426423 cctgatagcttacctcttgatg 13426402  T

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Target: chr5; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 6 - 223
Target Start/End: Complemental strand, 13413385 - 13413168
Alignment:
Q  6 aagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgccgacgatattgagaattactgcaccaaat 105  Q
    |||||||||||||||||||||||||| || || ||| || ||||||||||||| || ||  || |||||   ||| || |||||||||||||| ||||||    
T  13413385 aagtttaaagttggagacaaagtaggtgttggctacttgattgattcatgtcgatcatgccaagattgtaatgacaatcttgagaattactgccccaaat 13413286  T
Q  106 atactcaaacattcaatggtaagtctcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcc 205  Q
     |      ||||    ||  |||| ||||||||| ||  |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  13413285 ttgtagtcacatgtggtgccaagtatcgtgatggaaccgtcacttatggaggttactccgactcaatggttgcagacgagcactttgtgattcgcattcc 13413186  T
Q  206 tgatagcttacctcttga 223  Q
    ||| | | ||||||||||    
T  13413185 tgacaacatacctcttga 13413168  T

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Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 223
Target Start/End: Original strand, 13389015 - 13389234
Alignment:
Q  4 aaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgccgacgatattgagaattactgcaccaa 103  Q
    ||||||| || ||||||||||||||||| || || |||||||||||||||||||| || ||| |||||||||  ||| || |||| ||||||||  |||     
T  13389015 aaaagttcaatgttggagacaaagtaggtgttggctacatggttgattcatgtcgatcatgtcaaaattgtgttgacaatcttgaaaattactgtcccac 13389114  T
Q  104 atatactcaaacattcaatggtaagtctcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcatt 203  Q
    || ||||   ||||    ||  |||| ||| ||||| || | ||| ||||||||||  || |||||| |||||||||| ||| |||| ||| ||| ||||    
T  13389115 atttactttcacatgtggtgccaagtatcgcgatggaacgagcacatatggaggttattctgactcattggttgcagatgagaacttcgtggttcacatt 13389214  T
Q  204 cctgatagcttacctcttga 223  Q
    |||||| | ||||| |||||    
T  13389215 cctgatggattaccacttga 13389234  T

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Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 151 - 225
Target Start/End: Complemental strand, 13454089 - 13454015
Alignment:
Q  151 atggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcctgatagcttacctcttgatg 225  Q
    ||||||| ||||| |||||||||||| | ||||||||||||||| |||||||||| |||   |||||||||||||    
T  13454089 atggaggcttctctgactcaatggtttccgacgagcactttgtgtttcgcattccagatcagttacctcttgatg 13454015  T

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Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 223
Target Start/End: Original strand, 13393562 - 13393641
Alignment:
Q  144 atcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcctgatagcttacctcttga 223  Q
    ||||| |||||||| | ||| ||||||||||||||||| ||||||||| |  ||| |||||||||| ||||||| |||||    
T  13393562 atcacatatggagggtactctgactcaatggttgcagatgagcactttatagttcacattcctgatggcttaccacttga 13393641  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 98
Target Start/End: Original strand, 13385194 - 13385288
Alignment:
Q  4 aaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgccgacgatattgagaattactgc 98  Q
    ||||||| || ||||||||||||||||| || || |||||  ||||||||||||| || ||| |||||||||  ||| || |||| |||||||||    
T  13385194 aaaagttcaatgttggagacaaagtaggtgttggctacataattgattcatgtcgatcgtgtcaaaattgtgttgacaatcttgaaaattactgc 13385288  T

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Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 97
Target Start/End: Complemental strand, 13454237 - 13454143
Alignment:
Q  3 aaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgccgacgatattgagaattactg 97  Q
    |||||||| ||||||||||||| |||||| ||||||| | |||||||||| ||||  || ||| |||||||||  ||  || |||||||||||||    
T  13454237 aaaaagttcaaagttggagacagagtaggtgtgggatgcttggttgattcttgtcactcatgtcaaaattgtgttgataatcttgagaattactg 13454143  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 205
Target Start/End: Complemental strand, 47601427 - 47601353
Alignment:
Q  131 tcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcc 205  Q
    |||||||||||| | ||| || ||||||| ||| ||||||||||||| |||||||||||||||| ||| ||||||    
T  47601427 tcgtgatggcaccaccacatacggaggttactctgactcaatggttgtagacgagcactttgtggttcacattcc 47601353  T

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