View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21339_low_27 (Length: 237)
Name: NF21339_low_27
Description: NF21339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21339_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 175; Significance: 2e-94; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 33901670 - 33901448
Alignment:
| Q |
1 |
gaagtgcaagctcaaaactattcatagaagatggtatccatgattttgggtatgaattcaattttccagctacaaaccatgatatccatgttgaaagaga |
100 |
Q |
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| T |
33901670 |
gaagtgcaagctcaaaactattcatagaagatggtatccatgattttgggtatgaatgcaattttccagctacaaaccatgatatccatgttgaaagaga |
33901571 |
T |
|
| Q |
101 |
taacacgatcacctgc-aaaaacaagcaccaataagtatatgtaaaatacaattttattatttgacttaaatggttaaacacttgatgcatgtttgaaat |
199 |
Q |
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|||||| ||||||| | ||||||| |||||| |||||||||||||||||||||| |||||||||||||||||| |||||||| | |||||||| |||||| |
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| T |
33901570 |
taacacaatcacctacaaaaaacaggcaccagtaagtatatgtaaaatacaattatattatttgacttaaatgtttaaacacataatgcatgtctgaaat |
33901471 |
T |
|
| Q |
200 |
cacggtgaatttgacaaaatcat |
222 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
33901470 |
cacggtgaatttgacaaaatcat |
33901448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 33919194 - 33918976
Alignment:
| Q |
1 |
gaagtgcaagctcaaaactattcatagaagatggtatccatgattttgggtatgaattcaattttccagctacaaaccatgatatccatgttgaaagaga |
100 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
33919194 |
gaagtgcaagctcgaaattattcatagaagatggtatccatgattttgggtatgaatgcaattttccagctacaaaccatgatatccatgttgaaagaga |
33919095 |
T |
|
| Q |
101 |
taacacgatcacctgcaaaaacaagcaccaataagtatatgtaaaatacaattttattatttgacttaaatggttaaacacttgatgcatgtttgaaatc |
200 |
Q |
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|||||| ||||||| |||||||| |||||| |||||||||||||||||||||| |||||||||||||||||| |||||||| | || ||||||||||||| |
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| T |
33919094 |
taacacaatcacctacaaaaacaggcaccagtaagtatatgtaaaatacaattctattatttgacttaaatgtttaaacacataatacatgtttgaaatc |
33918995 |
T |
|
| Q |
201 |
acggtgaatttgacaaaat |
219 |
Q |
| |
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||||||||||||||||||| |
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| T |
33918994 |
acggtgaatttgacaaaat |
33918976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 37666182 - 37666146
Alignment:
| Q |
185 |
atgcatgtttgaaatcacggtgaatttgacaaaatca |
221 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||| |
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|
| T |
37666182 |
atgcatgtatgaaatcacggtgaatttgacaaaatca |
37666146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 40142684 - 40142647
Alignment:
| Q |
186 |
tgcatgtttgaaatcacggtgaatttgacaaaatcatg |
223 |
Q |
| |
|
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|
| T |
40142684 |
tgcatgtttgaaatcacggtggatttgacaaaatcatg |
40142647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 46090017 - 46090059
Alignment:
| Q |
180 |
acttgatgcatgtttgaaatcacggtgaatttgacaaaatcat |
222 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||| |||||||||| |
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|
| T |
46090017 |
acttgatgcatgtttggaatcacggtaaatttaacaaaatcat |
46090059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 45149800 - 45149759
Alignment:
| Q |
180 |
acttgatgcatgtttgaaatcacggtgaatttgacaaaatca |
221 |
Q |
| |
|
|||| |||||||||||||||||||| |||||| ||||||||| |
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|
| T |
45149800 |
acttaatgcatgtttgaaatcacggagaatttaacaaaatca |
45149759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 48574674 - 48574633
Alignment:
| Q |
180 |
acttgatgcatgtttgaaatcacggtgaatttgacaaaatca |
221 |
Q |
| |
|
|||| |||||||||||||||||||| |||||| ||||||||| |
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|
| T |
48574674 |
acttaatgcatgtttgaaatcacggagaatttaacaaaatca |
48574633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 12129803 - 12129763
Alignment:
| Q |
186 |
tgcatgtttgaaatcacggtgaatttgacaaaatcatgatg |
226 |
Q |
| |
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|||||||||| ||| | |||||||||||||||||||||||| |
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| T |
12129803 |
tgcatgtttggaatgatggtgaatttgacaaaatcatgatg |
12129763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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