View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21339_low_28 (Length: 227)

Name: NF21339_low_28
Description: NF21339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21339_low_28
NF21339_low_28
[»] chr7 (3 HSPs)
chr7 (7-196)||(36966516-36966705)
chr7 (7-98)||(2764440-2764530)
chr7 (188-227)||(36965488-36965527)
[»] chr6 (1 HSPs)
chr6 (6-101)||(2281530-2281625)
[»] chr2 (2 HSPs)
chr2 (19-100)||(35905852-35905933)
chr2 (28-101)||(17920388-17920461)
[»] chr3 (1 HSPs)
chr3 (28-98)||(40489327-40489397)
[»] chr4 (1 HSPs)
chr4 (32-100)||(55280560-55280628)
[»] chr5 (1 HSPs)
chr5 (7-98)||(18939852-18939944)


Alignment Details
Target: chr7 (Bit Score: 174; Significance: 9e-94; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 7 - 196
Target Start/End: Complemental strand, 36966705 - 36966516
Alignment:
Q  7 gttggttgtgcaggtatattggattgttcaggttccacaaaaagagataattcatgcttccgcacattccgctttgcgcactctgatcccaacaccaaca 106  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  36966705 gttggttgtgctggtatattggattgttcaggttctacaaaaagagataattcatgcttccgcacattccactttgcgcactctgatcccaacaccaaca 36966606  T
Q  107 gggtatacatgtatgatcaataccttgccattgtatatcctcagtaaagaactgttgtcatcaattaaaatacaaatatgaaaaaggata 196  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36966605 gggtatacatgtatgatcaatcccttgccattgtatatcctcagtaaagaactgttgtcatcaattaaaatacaaatatgaaaaaggata 36966516  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 7 - 98
Target Start/End: Complemental strand, 2764530 - 2764440
Alignment:
Q  7 gttggttgtgcaggtatattggattgttcaggttccacaaaaagagataattcatgcttccgcacattccgctttgcgcactctgatcccaa 98  Q
    ||||||||||| |||| |||||||||||||| ||||||||||| |||||||| | |||||| || ||||| | |||||||||||||||||||    
T  2764530 gttggttgtgctggtaaattggattgttcagattccacaaaaa-agataatttaagcttccacatattcctcattgcgcactctgatcccaa 2764440  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 188 - 227
Target Start/End: Complemental strand, 36965527 - 36965488
Alignment:
Q  188 aaaaggatataatctttttgacaaatatacaacaaattta 227  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  36965527 aaaaggatataatctttttgacaaatatacaacaaattta 36965488  T

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Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 6 - 101
Target Start/End: Original strand, 2281530 - 2281625
Alignment:
Q  6 agttggttgtgcaggtatattggattgttcaggttccacaaaaagagataattcatgcttccgcacattccgctttgcgcactctgatcccaacac 101  Q
    |||||| ||||| |||| ||||||||||||||||||||||||||||||||||| | ||||||||| |||||| ||||||||| |||||||||||||    
T  2281530 agttggctgtgctggtaaattggattgttcaggttccacaaaaagagataatttaagcttccgcagattccgttttgcgcacactgatcccaacac 2281625  T

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Target: chr2 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 35905852 - 35905933
Alignment:
Q  19 ggtatattggattgttcaggttccacaaaaagagataattcatgcttccgcacattccgctttgcgcactctgatcccaaca 100  Q
    |||| ||||||||||||||||||||||||||||||||||| | ||||||||| |||||||| ||||||||||||| ||||||    
T  35905852 ggtaaattggattgttcaggttccacaaaaagagataatttaagcttccgcatattccgctctgcgcactctgattccaaca 35905933  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 101
Target Start/End: Complemental strand, 17920461 - 17920388
Alignment:
Q  28 gattgttcaggttccacaaaaagagataattcatgcttccgcacattccgctttgcgcactctgatcccaacac 101  Q
    ||||||||| ||||| ||||||||||||||| | ||||||||| |||  || |||||||| |||||||||||||    
T  17920461 gattgttcatgttccccaaaaagagataatttaagcttccgcatattttgcattgcgcaccctgatcccaacac 17920388  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 40489327 - 40489397
Alignment:
Q  28 gattgttcaggttccacaaaaagagataattcatgcttccgcacattccgctttgcgcactctgatcccaa 98  Q
    ||||||||| ||| |||||||||||||||| || ||||||||  ||||||  |||| ||||||||||||||    
T  40489327 gattgttcaagtttcacaaaaagagataatccaagcttccgcttattccgtattgcacactctgatcccaa 40489397  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 100
Target Start/End: Original strand, 55280560 - 55280628
Alignment:
Q  32 gttcaggttccacaaaaagagataattcatgcttccgcacattccgctttgcgcactctgatcccaaca 100  Q
    ||||| ||||||||||||||||||||| |  |||| ||| ||| || |||||||||||| |||||||||    
T  55280560 gttcaagttccacaaaaagagataatttaaacttctgcatattgcgttttgcgcactctaatcccaaca 55280628  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 98
Target Start/End: Original strand, 18939852 - 18939944
Alignment:
Q  7 gttggttgtgcaggtatattggattgttcaggttccacaa-aaagagataattcatgcttccgcacattccgctttgcgcactctgatcccaa 98  Q
    ||||||||||| |||| ||| |||||||||| |||||||| ||| |||||||| | ||||| ||| |||  |  |||| ||||||||||||||    
T  18939852 gttggttgtgctggtaaatttgattgttcagattccacaagaaaaagataatttaagcttctgcatattttgtattgcacactctgatcccaa 18939944  T

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