View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21339_low_4 (Length: 455)
Name: NF21339_low_4
Description: NF21339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21339_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Complemental strand, 18576587 - 18576147
Alignment:
| Q |
1 |
aatcccactataattaagacaattgtacgatgagacaggtgaagattaaattcctaaactttaggtgttatttaaattcaaacctactctcgtacttctg |
100 |
Q |
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| T |
18576587 |
aatcccactataattaagacaattgtacgatgagacaggtgaagattaaattcctaaactttaggtgttatttaaattcaaacctactctcgtacttctg |
18576488 |
T |
|
| Q |
101 |
aagttatattttggtccccacatcacatgattaacgaactaaatttgagtccaatcatttccattggggggcagtactttaaataagatcatgaaagttt |
200 |
Q |
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| T |
18576487 |
aagttatattttggtccccacatcacatgattaacgaactaaatttgagtccaatcatttccattggggggcagtactttaaataagatcatgaaagttt |
18576388 |
T |
|
| Q |
201 |
tggtggtacttatgaataccaacgctataatcaaggtcatgaatataggtgggtagtattatccgcgatatgtggcttttcctagtatcatcaagttttt |
300 |
Q |
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| T |
18576387 |
tggtggtacttatgaataccaacgctataatcaaggtcatgaatataggtgggtagtatcatccgcgatatgtggcttttcctagtatcatcaagttttt |
18576288 |
T |
|
| Q |
301 |
gcattgaaattgttggcataaatcaagtatatgcaacaataatttctcgagtcgggtaggtctacgatggacgataaaacattttcgtcatgagttgaag |
400 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||| ||||||||| |
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| T |
18576287 |
gcattgaaattgttggcttaaatcaagtatatgcaacaataatttctcgagtcgggtaggtctacgatggacggcaaagcatttttgtcacgagttgaag |
18576188 |
T |
|
| Q |
401 |
tgttgaggaatattcatgtctagattcaaaccgatgatgtc |
441 |
Q |
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|||||||||||||||||| ||||||||||| | |||||||| |
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| T |
18576187 |
tgttgaggaatattcatggctagattcaaatctatgatgtc |
18576147 |
T |
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