View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21339_low_6 (Length: 434)
Name: NF21339_low_6
Description: NF21339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21339_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 19 - 314
Target Start/End: Complemental strand, 21056257 - 21055962
Alignment:
| Q |
19 |
atggtctgatcctgtgctacggttccagaaagggtactcggtggagatgagtttcactgctgaagaaatcaatgaacgtgcatgaccaattgctgggaag |
118 |
Q |
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| T |
21056257 |
atggtctgatcctgtgctacggttccagaaagggtactcggtggagatgagtttcactgctgaagaaatcaatgaacgtgcatgaccaattgctgggaag |
21056158 |
T |
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| Q |
119 |
ccattaacggtgctgaagttacaagaaacgtaaactggtacaaagaaaaaatcagcttcatatgggtcaaaagttcttacatcacttgttaataaagctc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21056157 |
ccattaacggtgctgaagttacaagaaacgtaaactggtacaaagaaaaaatcagcttcatatgggtcaaaagttcttacatcacttgttaataaagctc |
21056058 |
T |
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| Q |
219 |
tatgaatagcaacttctgaagcaaataaatgagttttgcatcttgggtttttaagccagtttttgttgtattttggtggaagatcatacacaaata |
314 |
Q |
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| T |
21056057 |
tatgaatagcaacttctgaagcaaataaatgagttttgcatcttgggtttttaagccagtttttgttgtattttggtggaagatcatacacaaata |
21055962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 375 - 424
Target Start/End: Complemental strand, 21055901 - 21055852
Alignment:
| Q |
375 |
tggataaggattgagaaagtgattttattgttgatgttatttgatgatgt |
424 |
Q |
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| T |
21055901 |
tggataaggattgagaaagtgattttattgttgatgttatttgatgatgt |
21055852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 56 - 274
Target Start/End: Original strand, 12172761 - 12172979
Alignment:
| Q |
56 |
tcggtggagatgagtttcactgctgaagaaatcaatgaacgtgcatgaccaattgctgggaagccattaacggtgctgaagttacaagaaacgtaaactg |
155 |
Q |
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| T |
12172761 |
tcggtggagatgagattaactactgaagaaatcaacgaacgtgcatgaccaattgcagggaagccattaacagtgctgaagttacaagaaacataaattg |
12172860 |
T |
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| Q |
156 |
gtacaaagaaaaaatcagcttcatatgggtcaaaagttcttacatcacttgttaataaagctctatgaatagcaacttctgaagcaaataaatgagtttt |
255 |
Q |
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||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||| |
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| T |
12172861 |
ctacaaagaaaaaatcagcttcgtaagggtcaaaagttctaacatcacttgttaataaagctctatgaatttcaacttttgaagcaaataaacgagtttt |
12172960 |
T |
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| Q |
256 |
gcatcttgggtttttaagc |
274 |
Q |
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| T |
12172961 |
gcatcttgagtttgtaagc |
12172979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 98 - 255
Target Start/End: Original strand, 35417133 - 35417290
Alignment:
| Q |
98 |
gcatgaccaattgctgggaagccattaacggtgctgaagttacaagaaacgtaaactggtacaaagaaaaaatcagcttcatatgggtcaaaagttctta |
197 |
Q |
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||||| |||||||| || || |||||||| ||||||||||| |||||||| ||||| || |||||||| |||||||||||||| |||||||||||||| | |
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| T |
35417133 |
gcatgtccaattgccggaaaaccattaactgtgctgaagttgcaagaaacataaacaggaacaaagaagaaatcagcttcataagggtcaaaagttctca |
35417232 |
T |
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| Q |
198 |
catcacttgttaataaagctctatgaatagcaacttctgaagcaaataaatgagtttt |
255 |
Q |
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|||||||| | || || || | ||||||||||||||||||||||| ||||| ||||| |
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| T |
35417233 |
catcacttttcaacaatgcggtgtgaatagcaacttctgaagcaaacaaatgtgtttt |
35417290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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