View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21339_low_7 (Length: 418)
Name: NF21339_low_7
Description: NF21339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21339_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 107; Significance: 2e-53; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 78 - 257
Target Start/End: Original strand, 50258801 - 50259001
Alignment:
| Q |
78 |
ataagcagcaagatatattccaagatctttttgcctaatagatgccaatagcttgacacagtgaataacttgggtcttttacgaagttatct-------- |
169 |
Q |
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| T |
50258801 |
ataagcagcaagataaattccaagatctttt-gtctaatagatgccaatagcttgacacggtgaataacttgggtcttttacgaagttatctttctggcc |
50258899 |
T |
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| Q |
170 |
--------------atttgcggagagaatgtgcgaaataacctcttctaagtgaattatttttgcattggtgatacttcaaatccttgcaaaaggatgaa |
255 |
Q |
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| T |
50258900 |
tgaacaagcacaaaatttgcggagagaatgtgcgaaataacctcttctaagtgaattatttttgcattggtgatacctcaaatccttgcaaaaggatgaa |
50258999 |
T |
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| Q |
256 |
ta |
257 |
Q |
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|| |
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| T |
50259000 |
ta |
50259001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 50258474 - 50258543
Alignment:
| Q |
18 |
tccatatttagtccaagagtaaataaaaataattttttggatacnnnnnnnatgaaacacataagcagca |
87 |
Q |
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| T |
50258474 |
tccatacttagtccaagagtaaataaaaataattttttggatactttttttatgaaacacataagcagca |
50258543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 170 - 210
Target Start/End: Original strand, 50260205 - 50260245
Alignment:
| Q |
170 |
atttgcggagagaatgtgcgaaataacctcttctaagtgaa |
210 |
Q |
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| T |
50260205 |
atttgcggagagaatgtgtgaaataacctcttctaagtgaa |
50260245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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