View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2133_high_11 (Length: 378)

Name: NF2133_high_11
Description: NF2133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2133_high_11
NF2133_high_11
[»] chr6 (15 HSPs)
chr6 (90-282)||(26146828-26147020)
chr6 (24-265)||(26062734-26062980)
chr6 (24-265)||(26082703-26082949)
chr6 (105-282)||(25548656-25548833)
chr6 (39-265)||(25453157-25453399)
chr6 (82-265)||(25489066-25489249)
chr6 (82-265)||(24771350-24771533)
chr6 (278-361)||(26146722-26146806)
chr6 (284-361)||(25514562-25514640)
chr6 (279-349)||(25548558-25548628)
chr6 (292-361)||(26061341-26061410)
chr6 (292-361)||(26081311-26081380)
chr6 (311-361)||(25986879-25986929)
chr6 (312-361)||(25488093-25488142)
chr6 (34-78)||(25548859-25548903)
[»] chr2 (1 HSPs)
chr2 (278-345)||(17988740-17988807)


Alignment Details
Target: chr6 (Bit Score: 152; Significance: 2e-80; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 90 - 282
Target Start/End: Complemental strand, 26147020 - 26146828
Alignment:
Q  90 ataggactctaccaaattccagatggattggatattgatattcagacctgatctagcnnnnnnnttgaggaaagcttttgtgaattcatttgactttgat 189  Q
    |||||||||||||||||||||||||||||| |||||||   ||||||||||||||||       ||||||||||||||||||||||||||||||||||||    
T  26147020 ataggactctaccaaattccagatggattgcatattgaagctcagacctgatctagcgaaaaaattgaggaaagcttttgtgaattcatttgactttgat 26146921  T
Q  190 aaaaaccagaatagattataaaaattacatacaatgcaaatattgaattttcatagttaactaaaacaccatataaaaactactttttcataa 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  26146920 aaaaaccagaatagattataaaaattacatacaatgcaaatattgaattttcataggtaactaaaacaccatataaaaactactttttcataa 26146828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 24 - 265
Target Start/End: Complemental strand, 26062980 - 26062734
Alignment:
Q  24 agagagagacatcgatccaagcatcagtaccagcttacattctgaaagaacac----ccatccttcccacataggactctaccaaattccagatggattg 119  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||  |     |||| ||||||||||||||||||||||||||||||||||||||    
T  26062980 agagagggacatcgatccaagcatcagtaccagcttacattctgaaagataattatgccattcttcccacataggactctaccaaattccagatggattg 26062881  T
Q  120 gatattgatattcagacctgatctagcnnnnnnn-ttgaggaaagcttttgtgaattcatttgactttgataaaaaccagaatagattataaaaattaca 218  Q
    ||||||||  ||||| |||||||||||        ||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||| | ||||    
T  26062880 gatattgaagttcaggcctgatctagcgaaaaaaattgaggaaagcttttgtcaattcatttgactcagataaaaaccagaatagattataaacactaca 26062781  T
Q  219 tacaatgcaaatattgaattttcatagttaactaaaacaccatataa 265  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  26062780 tacaatgcaaatattcaattttcatagttaactaaaacaccatataa 26062734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 24 - 265
Target Start/End: Complemental strand, 26082949 - 26082703
Alignment:
Q  24 agagagagacatcgatccaagcatcagtaccagcttacattctgaaagaacac----ccatccttcccacataggactctaccaaattccagatggattg 119  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||  |     |||| ||||||||||||||||||||||||||||||||||||||    
T  26082949 agagagggacatcgatccaagcatcagtaccagcttacattctgaaagataattatgccattcttcccacataggactctaccaaattccagatggattg 26082850  T
Q  120 gatattgatattcagacctgatctagcnnnnnnn-ttgaggaaagcttttgtgaattcatttgactttgataaaaaccagaatagattataaaaattaca 218  Q
    ||||||||  ||||| |||||||||||        ||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||| | ||||    
T  26082849 gatattgaagttcaggcctgatctagcgaaaaaaattgaggaaagcttttgtcaattcatttgactcagataaaaaccagaatagattataaacactaca 26082750  T
Q  219 tacaatgcaaatattgaattttcatagttaactaaaacaccatataa 265  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  26082749 tacaatgcaaatattcaattttcatagttaactaaaacaccatataa 26082703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 105 - 282
Target Start/End: Complemental strand, 25548833 - 25548656
Alignment:
Q  105 attccagatggattggatattgatattcagacctgatctagcnnnnnnnttgaggaaagcttttgtgaattcatttgactttgataaaaaccagaataga 204  Q
    ||||||||||||||| |||||||   ||||||||||||||||        |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  25548833 attccagatggattgaatattgaagctcagacctgatctagcgaaaaaaatgaggaaagcttttgtcaattcatttgactttgataaaaaccagaataga 25548734  T
Q  205 ttataaaaattacatacaatgcaaatattgaattttcatagttaactaaaacaccatataaaaactactttttcataa 282  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  25548733 ttataaaaattacatacaatgcaaatattgaatattcatagttaactaaaacaccatataaaaactactttttcataa 25548656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 39 - 265
Target Start/End: Complemental strand, 25453399 - 25453157
Alignment:
Q  39 tccaagcatcagtaccagcttacattctgaaagaacaccc--------------atccttcccacataggactctaccaaattccagatggattggatat 124  Q
    |||| |||||||||||||||||||||||||||||||||||              || ||||||| |||||||||||||||||||||||||||||||||||    
T  25453399 tccacgcatcagtaccagcttacattctgaaagaacaccctcactaattatgccattcttcccatataggactctaccaaattccagatggattggatat 25453300  T
Q  125 tgatattcagacctgatctagcnnnnnnnttgaggaaagcttttgtgaattcatttgactttgataaaaaccagaatagattataaaaatt--acataca 222  Q
    |||  |||||  ||||||||||       ||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||| |  |||||||    
T  25453299 tgaagttcaggtctgatctagcaaaaaaattgaggaaagcttttgtcaattcatttgactcagataaaaaccagaatagattataaaaactacacataca 25453200  T
Q  223 atgcaaatattgaattttcatagttaactaaaacaccatataa 265  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  25453199 atgcaaatattgaattttcatagttaactaaaacaccacataa 25453157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 82 - 265
Target Start/End: Complemental strand, 25489249 - 25489066
Alignment:
Q  82 cttcccacataggactctaccaaattccagatggattggatattgatattcagacctgatctagcnnnnnnn-ttgaggaaagcttttgtgaattcattt 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||        ||||||||||||||||| |||||||||    
T  25489249 cttcccacataggactctaccaaattccagatggattggatattgaagttcaggcctgatctagcgaaaaaaattgaggaaagcttttgtcaattcattt 25489150  T
Q  181 gactttgataaaaaccagaatagattataaaaattacatacaatgcaaatattgaattttcatagttaactaaaacaccatataa 265  Q
    ||||  |||||||||||||||||||||||| | | |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  25489149 gactcagataaaaaccagaatagattataacact-acatacaatgcaaatattcaattttcatagttaactaaaacaccatataa 25489066  T

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Target: chr6; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 82 - 265
Target Start/End: Complemental strand, 24771533 - 24771350
Alignment:
Q  82 cttcccacataggactctaccaaattccagatggattggatattgatattcagacctgatctagcnnnnnnnttgaggaaagcttttgtgaattcatttg 181  Q
    |||||||||||||||| ||||||| |||| ||||||||||| ||||  ||||||| | |||||||       ||||||||||||||||| |||||| |||    
T  24771533 cttcccacataggactttaccaaactccacatggattggattttgaagttcagacattatctagcacaaaaattgaggaaagcttttgtcaattcacttg 24771434  T
Q  182 actttgataaaaaccagaatagattataaaaattacatacaatgcaaatattgaattttcatagttaactaaaacaccatataa 265  Q
    |   ||||||||||||||||||  | |||||| | ||| ||||||||||||||||||| | ||||||||| |||||||||||||    
T  24771433 atgctgataaaaaccagaatagtgtgtaaaaactgcatgcaatgcaaatattgaatttacttagttaacttaaacaccatataa 24771350  T

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Target: chr6; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 278 - 361
Target Start/End: Complemental strand, 26146806 - 26146722
Alignment:
Q  278 cataaaacattaaaatacattatccgaggttggcctccat-aatttacatgtacttctaaaatggtattcattctataatctaat 361  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26146806 cataaaacattcaaatacattatccgaggttggcctccatgaatttacatgtacttctaaaatggtattcattctataatctaat 26146722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 284 - 361
Target Start/End: Complemental strand, 25514640 - 25514562
Alignment:
Q  284 acattaaaatacattatccgaggttggcctccat-aatttacatgtacttctaaaatggtattcattctataatctaat 361  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  25514640 acattaaaatacattatccgaggttggcctccatgaatttacatgtacttctaaaatggtattcattctataatctaat 25514562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 279 - 349
Target Start/End: Complemental strand, 25548628 - 25548558
Alignment:
Q  279 ataaaacattaaaatacattatccgaggttggcctccataatttacatgtacttctaaaatggtattcatt 349  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  25548628 ataaaacattcaaatacattatccgaggttggcctccatattttacatgtacttctaaaatggtattcatt 25548558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 292 - 361
Target Start/End: Complemental strand, 26061410 - 26061341
Alignment:
Q  292 atacattatccgaggttggcctccataatttacatgtacttctaaaatggtattcattctataatctaat 361  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26061410 atacattatccaaggttggcctccataatttacatgtacttctaaaatggtgttcattctataatctaat 26061341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 292 - 361
Target Start/End: Complemental strand, 26081380 - 26081311
Alignment:
Q  292 atacattatccgaggttggcctccataatttacatgtacttctaaaatggtattcattctataatctaat 361  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26081380 atacattatccaaggttggcctccataatttacatgtacttctaaaatggtgttcattctataatctaat 26081311  T

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Target: chr6; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 311 - 361
Target Start/End: Complemental strand, 25986929 - 25986879
Alignment:
Q  311 cctccataatttacatgtacttctaaaatggtattcattctataatctaat 361  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25986929 cctccataatttacatgtacttctaaaatggtattcattctataatctaat 25986879  T

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Target: chr6; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 312 - 361
Target Start/End: Complemental strand, 25488142 - 25488093
Alignment:
Q  312 ctccataatttacatgtacttctaaaatggtattcattctataatctaat 361  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  25488142 ctccataatttacatgtacttctaaaatggtgttcattctataatctaat 25488093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 25548903 - 25548859
Alignment:
Q  34 atcgatccaagcatcagtaccagcttacattctgaaagaacaccc 78  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  25548903 atcgatccaagcatcagtaccaacttacattctgaaagaacaccc 25548859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 278 - 345
Target Start/End: Original strand, 17988740 - 17988807
Alignment:
Q  278 cataaaacattaaaatacattatccgaggttggcctccataatttacatgtacttctaaaatggtatt 345  Q
    |||||||| || ||||||||||||| | ||||||||||| |||||||||| ||||||| |||||||||    
T  17988740 cataaaacgttcaaatacattatccaaagttggcctccagaatttacatgaacttctacaatggtatt 17988807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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