View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2133_high_12 (Length: 363)
Name: NF2133_high_12
Description: NF2133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2133_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 4 - 347
Target Start/End: Original strand, 35814448 - 35814791
Alignment:
| Q |
4 |
atcatcatcatcaacaacaaccactaagcaggtatgaatctcaaaaacgtagagattggaacacctttaatcaatatctcaagagtcaaaatccactagt |
103 |
Q |
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| T |
35814448 |
atcatcatcagcaacaacaaccactaagcaggtatgaatctcaaaaacgtagagattggaacacctttaatcaatatctcaagagtcaaaatccactagt |
35814547 |
T |
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| Q |
104 |
tccactatcacactgtaacttcaaccatgttcttgattttcttcgttaccttgaccaatttggtaagactaaggttcactttcaaggttgcatcttcttt |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35814548 |
tccactatcacactgtaacttcaaccatgttcttgattttcttcgttaccttgatcaatttggtaagactaaggttcactttcaaggttgcatcttcttt |
35814647 |
T |
|
| Q |
204 |
ggacaacctaccccacctgcaccatgtgcttgtcctctcaagcaagcttggggaagtcttgatgcactcatcggacgccttcgtgctgcctacgaagaga |
303 |
Q |
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| T |
35814648 |
ggacaacctaccccacctgcaccttgtgcttgtcctctcaagcaagcttggggaagtcttgatgcactcatcggacgccttcgagctgcctacgaagaga |
35814747 |
T |
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| Q |
304 |
acggtggatcatcggagactaacccctttgccggaggagctatt |
347 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35814748 |
acggtggatcatcggagactaacccctttgccggaggagctatt |
35814791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 120 - 313
Target Start/End: Original strand, 4863108 - 4863301
Alignment:
| Q |
120 |
aacttcaaccatgttcttgattttcttcgttaccttgaccaatttggtaagactaaggttcactttcaaggttgcatcttctttggacaacctaccccac |
219 |
Q |
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| T |
4863108 |
aacttcaaccatgtgcttgagttccttcgttacttagatcaatttggaaagactaaggttcacttgcacggttgcatctttttcggacaacccgatccgc |
4863207 |
T |
|
| Q |
220 |
ctgcaccatgtgcttgtcctctcaagcaagcttggggaagtcttgatgcactcatcggacgccttcgtgctgcctacgaagagaacggtggatc |
313 |
Q |
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| T |
4863208 |
cggcaccgtgtacttgtccgttgagacaagcttgggggagtcttgatgcactcatcggacggctaagagctgcttatgaagaacacggtggatc |
4863301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 216 - 271
Target Start/End: Complemental strand, 32002208 - 32002153
Alignment:
| Q |
216 |
ccacctgcaccatgtgcttgtcctctcaagcaagcttggggaagtcttgatgcact |
271 |
Q |
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| T |
32002208 |
ccacctggaccatgtacttgtcctctaaaacaagcttggggaagtcttgatgcact |
32002153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 96 - 259
Target Start/End: Original strand, 30941918 - 30942081
Alignment:
| Q |
96 |
ccactagttccactatcacactgtaacttcaaccatgttcttgattttcttcgttaccttgaccaatttggtaagactaaggttcactttcaaggttgca |
195 |
Q |
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|||| ||||||||| ||||| || || |||||||||| | ||||| ||||||||| | ||||||||||| || ||||||||||| | |||||||| | |
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| T |
30941918 |
ccaccagttccactttcacagtgcaatagcaaccatgttttggatttccttcgttacttagaccaatttggaaaaactaaggttcatgtacaaggttgta |
30942017 |
T |
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| Q |
196 |
tcttctttggacaacctaccccacctgcaccatgtgcttgtcctctcaagcaagcttggggaag |
259 |
Q |
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| || | ||||||||| ||||||||||| ||| |||||||||| | |||||||||||||| |
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| T |
30942018 |
tgttttatggacaaccagaaccacctgcaccttgtacttgtcctcttagacaagcttggggaag |
30942081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 30864327 - 30864403
Alignment:
| Q |
204 |
ggacaacctaccccacctgcaccatgtgcttgtcctctcaagcaagcttggggaagtcttgatgcactcatcggacg |
280 |
Q |
| |
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|||||||||| ||||||| | || || ||||||||||| |||||||| |||||||||||||| || ||||||||||| |
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| T |
30864327 |
ggacaacctaacccaccttctccttgcgcttgtcctcttaagcaagcgtggggaagtcttgacgctctcatcggacg |
30864403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 246 - 310
Target Start/End: Original strand, 35608729 - 35608793
Alignment:
| Q |
246 |
caagcttggggaagtcttgatgcactcatcggacgccttcgtgctgcctacgaagagaacggtgg |
310 |
Q |
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| T |
35608729 |
caagcgtggggtagtctcgacgctctcatcggtcgccttcgtgctgcttacgaagagaacggtgg |
35608793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 33672142 - 33672088
Alignment:
| Q |
215 |
cccacctgcaccatgtgcttgtcctctcaagcaagcttggggaagtcttgatgca |
269 |
Q |
| |
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|||||||||||| ||| |||||||||| |||||||||||||||||||||||| |
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|
| T |
33672142 |
cccacctgcaccttgtccttgtcctctacgacaagcttggggaagtcttgatgca |
33672088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 38980627 - 38980705
Alignment:
| Q |
216 |
ccacctgcaccatgtgcttgtcctctcaagcaagcttggggaagtcttgatgcactcatcggacgccttcgtgctgcct |
294 |
Q |
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| T |
38980627 |
ccaccagcaccatgtccatgtcctctgaggcaagcatggggaagccttgatgcactcataggtcgtcttcgtgccgcct |
38980705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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