View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2133_high_15 (Length: 301)

Name: NF2133_high_15
Description: NF2133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2133_high_15
NF2133_high_15
[»] chr3 (13 HSPs)
chr3 (12-282)||(11496596-11496866)
chr3 (12-278)||(5966679-5966945)
chr3 (12-279)||(2920391-2920658)
chr3 (12-277)||(11490125-11490393)
chr3 (10-167)||(4079238-4079395)
chr3 (12-155)||(5052754-5052897)
chr3 (10-167)||(4059629-4059786)
chr3 (31-163)||(4130837-4130969)
chr3 (119-277)||(7490016-7490174)
chr3 (12-167)||(4114102-4114259)
chr3 (69-163)||(4091370-4091464)
chr3 (54-163)||(910730-910839)
chr3 (28-91)||(7491565-7491628)
[»] chr8 (1 HSPs)
chr8 (12-279)||(18388884-18389151)
[»] scaffold0603 (1 HSPs)
scaffold0603 (12-266)||(3822-4076)
[»] chr5 (1 HSPs)
chr5 (27-279)||(16447669-16447921)
[»] chr1 (2 HSPs)
chr1 (12-277)||(17312608-17312867)
chr1 (12-167)||(13934245-13934400)
[»] chr4 (1 HSPs)
chr4 (25-279)||(5989402-5989656)
[»] scaffold0267 (1 HSPs)
scaffold0267 (11-118)||(19559-19666)


Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 12 - 282
Target Start/End: Complemental strand, 11496866 - 11496596
Alignment:
Q  12 atgaaacagttgcgtgtgttgtctttgtcaaactacaagagtatcactgaggttcccaaatctattggaaatttgttatacctgcggtacttaaatcttt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  11496866 atgaaacagttgcgtgtgttgtctttgtcaaactacaagagtatcaccgaggttcccaaatctattggaaatttgttatacctccggtacttaaatcttt 11496767  T
Q  112 ctcacactaatattgaaagattgccttatgaaacatgcaagctttacaatctacagttcttgttattggcaggctgtagaaagctcgttgaattgcccga 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  11496766 ctcacactaatattgaaagattgccttatgaaacatgcaagctttacaatctgcagttcttgttattggcaggctgtagaaggctcgttgaattgcccga 11496667  T
Q  212 ggacataggagaattggtcaatctacagtgtcttgacattagtgacactgcattgggggagatgcccgcac 282  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  11496666 ggacataggagaattggtcaatctacagtgccttgacattagtgacactgcattgggggagatgcccgcac 11496596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 12 - 278
Target Start/End: Original strand, 5966679 - 5966945
Alignment:
Q  12 atgaaacagttgcgtgtgttgtctttgtcaaactacaagagtatcactgaggttcccaaatctattggaaatttgttatacctgcggtacttaaatcttt 111  Q
    |||||||| |||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5966679 atgaaacaattgcgtgtgttgtctttgacaaactacaaaagcatcactgaggttcccaaatctattggaaatttgttatacctgcggtacttaaatcttt 5966778  T
Q  112 ctcacactaatattgaaagattgccttatgaaacatgcaagctttacaatctacagttcttgttattggcaggctgtagaaagctcgttgaattgcccga 211  Q
    |||||||||| |||||||  ||||||  |||||||||||||||||||||||| ||||||||||| ||| ||||||||| || ||||  ||||||||| ||    
T  5966779 ctcacactaagattgaaaagttgcctagtgaaacatgcaagctttacaatctgcagttcttgttgttgtcaggctgtaaaaggctcactgaattgccaga 5966878  T
Q  212 ggacataggagaattggtcaatctacagtgtcttgacattagtgacactgcattgggggagatgccc 278  Q
    |||||| ||| ||||||| | | | |   |||||||||||||||||||||||||| |||||||||||    
T  5966879 ggacatgggaaaattggttagtttgcgccgtcttgacattagtgacactgcattgagggagatgccc 5966945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 12 - 279
Target Start/End: Original strand, 2920391 - 2920658
Alignment:
Q  12 atgaaacagttgcgtgtgttgtctttgtcaaactacaagagtatcactgaggttcccaaatctattggaaatttgttatacctgcggtacttaaatcttt 111  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2920391 atgaaacagttacgtgtgttgtctttgtcaaactacaagagtatcactgaggttcccaactctattggaaatttgttatacctgcggtacttaaatcttt 2920490  T
Q  112 ctcacactaatattgaaagattgccttatgaaacatgcaagctttacaatctacagttcttgttattggcaggctgtagaaagctcgttgaattgcccga 211  Q
    |||| ||| | ||||||||  |||||| |||||||||| ||||||||||||| ||||||||||| ||| |||| |||| || | || |||||||||| ||    
T  2920491 ctcatactgagattgaaaggctgccttctgaaacatgccagctttacaatcttcagttcttgttgttgtcaggatgtaaaaggttcattgaattgccaga 2920590  T
Q  212 ggacataggagaattggtcaatctacagtgtcttgacattagtgacactgcattgggggagatgcccg 279  Q
    |||||| ||| ||||||| ||||||      |||||| ||||||||||||||||| ||||||||||||    
T  2920591 ggacatgggaaaattggttaatctatgccaccttgacgttagtgacactgcattgagggagatgcccg 2920658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 12 - 277
Target Start/End: Complemental strand, 11490393 - 11490125
Alignment:
Q  12 atgaaacagttgcgtgtgttgtctttgtcaaactacaagagtatcactgaggttcccaaatctattggaaatttgttatacctgcggtacttaaatcttt 111  Q
    |||||||| || ||||| ||||| ||||||||||||| ||||||||| ||| ||||||| ||||||| ||||||||||| ||||||||||||||||||||    
T  11490393 atgaaacaattacgtgttttgtccttgtcaaactacaggagtatcaccgagattcccaactctattgaaaatttgttatgcctgcggtacttaaatcttt 11490294  T
Q  112 ctcacactaatattgaaagattgccttatgaaacatgcaagctttacaatctacagttcttgttattggcaggctgtagaaagctcgttgaattgcccga 211  Q
    | |||||||| |||||||| ||||||| || ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||| || ||    
T  11490293 cccacactaagattgaaaggttgccttctgcaacatgcaagctttacaatctgcagttcttgttgttggcaggctgtagaaagctcattgaatttccgga 11490194  T
Q  212 ggacataggagaattggtcaatctacagtgtcttgacattagtgac---actgcattgggggagatgcc 277  Q
    ||| || ||  ||||||| ||||| |     |||||||||||||||   ||||||||| ||||||||||    
T  11490193 ggatatggggaaattggttaatctccgccaccttgacattagtgacagtactgcattgagggagatgcc 11490125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 10 - 167
Target Start/End: Complemental strand, 4079395 - 4079238
Alignment:
Q  10 agatgaaacagttgcgtgtgttgtctttgtcaaactacaagagtatcactgaggttcccaaatctattggaaatttgttatacctgcggtacttaaatct 109  Q
    ||||||||||||| | |||||||||| ||||||||||| | | |||||||||| | ||||| ||||||||||||||| |||||||||| ||||||||| |    
T  4079395 agatgaaacagttacatgtgttgtctctgtcaaactaccataatatcactgagttgcccaactctattggaaatttgatatacctgcgatacttaaatgt 4079296  T
Q  110 ttctcacactaatattgaaagattgccttatgaaacatgcaagctttacaatctacag 167  Q
     |||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||    
T  4079295 ctctcacactagtattgaaaggttgccttctgaaacatgcaagctttacaatctacag 4079238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 12 - 155
Target Start/End: Original strand, 5052754 - 5052897
Alignment:
Q  12 atgaaacagttgcgtgtgttgtctttgtcaaactacaagagtatcactgaggttcccaaatctattggaaatttgttatacctgcggtacttaaatcttt 111  Q
    |||||||| || || |||||||||||||||||||||| ||||||||| ||||||||||| ||||||| |||||||||||||||| |||||||||||||||    
T  5052754 atgaaacaattacgcgtgttgtctttgtcaaactacaggagtatcaccgaggttcccaactctattgaaaatttgttatacctgaggtacttaaatcttt 5052853  T
Q  112 ctcacactaatattgaaagattgccttatgaaacatgcaagctt 155  Q
    | |||||||| |||||||| ||||||| || |||||||||||||    
T  5052854 cccacactaagattgaaaggttgccttctgcaacatgcaagctt 5052897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 10 - 167
Target Start/End: Complemental strand, 4059786 - 4059629
Alignment:
Q  10 agatgaaacagttgcgtgtgttgtctttgtcaaactacaagagtatcactgaggttcccaaatctattggaaatttgttatacctgcggtacttaaatct 109  Q
    ||||||||||||| | |||||||||| ||||||||||| | | |||||||| | | ||||| ||||||||||||||| |||||||||| ||||||||| |    
T  4059786 agatgaaacagttacatgtgttgtctctgtcaaactaccataatatcactgcgttgcccaactctattggaaatttgatatacctgcgatacttaaatgt 4059687  T
Q  110 ttctcacactaatattgaaagattgccttatgaaacatgcaagctttacaatctacag 167  Q
     |||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||    
T  4059686 ctctcacactagtattgaaaggttgccttctgaaacatgcaagctttacaatctacag 4059629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 31 - 163
Target Start/End: Original strand, 4130837 - 4130969
Alignment:
Q  31 tgtctttgtcaaactacaagagtatcactgaggttcccaaatctattggaaatttgttatacctgcggtacttaaatctttctcacactaatattgaaag 130  Q
    ||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||| |||||||||| ||||||||||| ||||||||| | |||  ||     
T  4130837 tgtctttgtcaaactacaagaatatcactgagtttcccaattctattggaaatttgatatacctgcgatacttaaatctctctcacactgagattagaat 4130936  T
Q  131 attgccttatgaaacatgcaagctttacaatct 163  Q
     |||||   ||||||||||||||||||||||||    
T  4130937 gttgcccgctgaaacatgcaagctttacaatct 4130969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 119 - 277
Target Start/End: Complemental strand, 7490174 - 7490016
Alignment:
Q  119 taatattgaaagattgccttatgaaacatgcaagctttacaatctacagttcttgttattggcaggctgtagaaagctcgttgaattgcccgaggacata 218  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| |||||||| || |||| ||||||||||| |||| ||||||| || ||||||||     
T  7490174 taatattgaaaggttgccttctgaaacatgcaagctttacaatctgcagttcttattgttggtaggctgtagaaggctcattgaatttccggaggacatt 7490075  T
Q  219 ggagaattggtcaatctacagtgtcttgacattagtgacactgcattgggggagatgcc 277  Q
    ||| ||||||| ||||| ||    |||||  |||| |||||||||||| ||||||||||    
T  7490074 ggaaaattggttaatctgcatcaccttgatgttagcgacactgcattgagggagatgcc 7490016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 12 - 167
Target Start/End: Complemental strand, 4114259 - 4114102
Alignment:
Q  12 atgaaacagttgcgtgtgttgtctttgtcaaactacaa--gagtatcactgaggttcccaaatctattggaaatttgttatacctgcggtacttaaatct 109  Q
    ||||||||||| |||||||||||| | ||||| ||||   || ||||||| || | ||||| ||||||||||||||| |||||||||| ||||||||| |    
T  4114259 atgaaacagttacgtgtgttgtctctatcaaattacacaggaatatcactaagttgcccaactctattggaaatttgatatacctgcgatacttaaatgt 4114160  T
Q  110 ttctcacactaatattgaaagattgccttatgaaacatgcaagctttacaatctacag 167  Q
     |||| ||||| |||| |||| ||||||| ||||||||||||||||| ||||||||||    
T  4114159 ctctcgcactagtattcaaaggttgccttctgaaacatgcaagctttgcaatctacag 4114102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 69 - 163
Target Start/End: Complemental strand, 4091464 - 4091370
Alignment:
Q  69 aaatctattggaaatttgttatacctgcggtacttaaatctttctcacactaatattgaaagattgccttatgaaacatgcaagctttacaatct 163  Q
    ||||||||||||| |||| ||||||| || ||||||||||| ||| ||||||  |||| ||| ||||| | ||||||||||||||||||||||||    
T  4091464 aaatctattggaagtttgatatacctacgatacttaaatctctctgacactatgattggaaggttgccctctgaaacatgcaagctttacaatct 4091370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 54 - 163
Target Start/End: Complemental strand, 910839 - 910730
Alignment:
Q  54 atcactgaggttcccaaatctattggaaatttgttatacctgcggtacttaaatctttctcacactaatattgaaagattgccttatgaaacatgcaagc 153  Q
    ||||||||| | ||| |||||||||| |||||| |||||||||| ||||| ||||| ||| |||||   |||||||| ||||||| || |||||||||||    
T  910839 atcactgagttgcccgaatctattgggaatttgatatacctgcgatacttgaatctctcttacactgggattgaaaggttgccttctgcaacatgcaagc 910740  T
Q  154 tttacaatct 163  Q
    |||| |||||    
T  910739 tttaaaatct 910730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 28 - 91
Target Start/End: Complemental strand, 7491628 - 7491565
Alignment:
Q  28 tgttgtctttgtcaaactacaagagtatcactgaggttcccaaatctattggaaatttgttata 91  Q
    ||||||| |||||||||||||| |||||||| ||||||| ||| ||||||||||||||||||||    
T  7491628 tgttgtcattgtcaaactacaaaagtatcaccgaggttcgcaactctattggaaatttgttata 7491565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 12 - 279
Target Start/End: Original strand, 18388884 - 18389151
Alignment:
Q  12 atgaaacagttgcgtgtgttgtctttgtcaaactacaagagtatcactgaggttcccaaatctattggaaatttgttatacctgcggtacttaaatcttt 111  Q
    ||||||||||| ||  || ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||| ||||| |||||||    
T  18388884 atgaaacagttacgcatgctgtctttgtcaaactacaagagtatcactgaggttcccaaaacaattggaaatttgttacacctgcgctacttgaatcttt 18388983  T
Q  112 ctcacactaatattgaaagattgccttatgaaacatgcaagctttacaatctacagttcttgttattggcaggctgtagaaagctcgttgaattgcccga 211  Q
    |||| ||||| |||||||| ||||||| |||||||||||||||||||||||| ||||||||| | ||| ||||||||| || | ||  |||||||||  |    
T  18388984 ctcatactaagattgaaaggttgccttctgaaacatgcaagctttacaatctgcagttcttgctgttgtcaggctgtaaaaggttcactgaattgccaca 18389083  T
Q  212 ggacataggagaattggtcaatctacagtgtcttgacattagtgacactgcattgggggagatgcccg 279  Q
    |||||| ||| |||||||||||||||     |||||| |||||||||||||| || | ||||||||||    
T  18389084 ggacattggaaaattggtcaatctacgtcaccttgacgttagtgacactgcactgagtgagatgcccg 18389151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 12 - 266
Target Start/End: Complemental strand, 4076 - 3822
Alignment:
Q  12 atgaaacagttgcgtgtgttgtctttgtcaaactacaagagtatcactgaggttcccaaatctattggaaatttgttatacctgcggtacttaaatcttt 111  Q
    |||||||| || || ||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||| |||| | ||||||||||||||    
T  4076 atgaaacaattacgcgtgttgtctttgtcaaattacaagagtatcactgaggttcccaactctattgcaaatttgttacaccttcagtacttaaatcttt 3977  T
Q  112 ctcacactaatattgaaagattgccttatgaaacatgcaagctttacaatctacagttcttgttattggcaggctgtagaaagctcgttgaattgcccga 211  Q
    | |||||||  |||||||| ||||||| |||||| ||| ||||||||||||| ||||||||||||||| ||||||||| |||||||  ||||||||| ||    
T  3976 cccacactatgattgaaaggttgccttctgaaacttgcgagctttacaatctgcagttcttgttattgtcaggctgtaaaaagctcactgaattgccaga 3877  T
Q  212 ggacataggagaattggtcaatctacagtgtcttgacattagtgacactgcattg 266  Q
    |||||| ||| ||||||| ||||||      |||||| |||||||||||||||||    
T  3876 ggacattggaaaattggttaatctatgccaccttgacgttagtgacactgcattg 3822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 27 - 279
Target Start/End: Original strand, 16447669 - 16447921
Alignment:
Q  27 gtgttgtctttgtcaaactacaagagtatcactgaggttcccaaatctattggaaatttgttatacctgcggtacttaaatctttctcacactaatattg 126  Q
    ||||| ||||||||||||||||  |||||||||||||||||||| |||||||||| |||| |||||||||||||| ||||||||||||||||  | ||||    
T  16447669 gtgttatctttgtcaaactacagaagtatcactgaggttcccaactctattggaagtttgatatacctgcggtacctaaatctttctcacacacagattg 16447768  T
Q  127 aaagattgccttatgaaacatgcaagctttacaatctacagttcttgttattggcaggctgtagaaagctcgttgaattgcccgaggacataggagaatt 226  Q
    |||| ||||||| | |||||||||||||||||||||||||||||||||| ||| ||||||||| || ||||  ||||||||| || ||||| ||| ||||    
T  16447769 aaaggttgccttctaaaacatgcaagctttacaatctacagttcttgttgttgtcaggctgtaaaaggctcactgaattgccggaagacatgggaaaatt 16447868  T
Q  227 ggtcaatctacagtgtcttgacattagtgacactgcattgggggagatgcccg 279  Q
     || |||||||     ||| |||||||||||||||||||| ||||||||||||    
T  16447869 agttaatctactccaccttaacattagtgacactgcattgagggagatgcccg 16447921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 119; Significance: 8e-61; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 12 - 277
Target Start/End: Original strand, 17312608 - 17312867
Alignment:
Q  12 atgaaacagttgcgtgtgttgtctttgtcaaactacaagagtatcactgaggttcccaaatctattggaaatttgttatacctgcggtacttaaatcttt 111  Q
    |||||||| || |||| ||||||||||||||||||||||||||||| | ||||||| || ||||||||||| ||||| | |||||||||||||||| |||    
T  17312608 atgaaacaattacgtgcgttgtctttgtcaaactacaagagtatcattaaggttccgaagtctattggaaaattgtttttcctgcggtacttaaatgttt 17312707  T
Q  112 ctcacactaatattgaaagattgccttatgaaacatgcaagctttacaatctacagttcttgttattggcaggctgtagaaagctcgttgaattgcccga 211  Q
    |||||||||| |||| ||| ||||||| |||||||||||||||||||||||| ||||||      |||||||| |||| || |||| |||||||||| ||    
T  17312708 ctcacactaagattggaaggttgccttctgaaacatgcaagctttacaatctgcagttc------ttggcaggttgtacaaggctcattgaattgccaga 17312801  T
Q  212 ggacataggagaattggtcaatctacagtgtcttgacattagtgacactgcattgggggagatgcc 277  Q
      ||||||||||||||||||||||    || ||||| |||||||||||||||||| ||| ||||||    
T  17312802 ccacataggagaattggtcaatctgtgctgccttgaaattagtgacactgcattgagggggatgcc 17312867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 167
Target Start/End: Original strand, 13934245 - 13934400
Alignment:
Q  12 atgaaacagttgcgtgtgttgtctttgtcaaactacaagagtatcactgaggttcccaaatctattggaaatttgttatacctgcggtacttaaatcttt 111  Q
    ||||||||||| | |||||||||| | ||||| ||||||| ||||||| || | ||||| ||||||||||||||  |||||||||| ||||||||||| |    
T  13934245 atgaaacagttacatgtgttgtctctatcaaattacaagaatatcactaagttgcccaactctattggaaatttaatatacctgcgatacttaaatctct 13934344  T
Q  112 ctcacactaatattgaaagattgccttatgaaacatgcaagctttacaatctacag 167  Q
    ||| ||||   |||  ||| ||||||| ||||||||||||||||||||||||||||    
T  13934345 ctcgcactgggattagaaggttgccttctgaaacatgcaagctttacaatctacag 13934400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 25 - 279
Target Start/End: Original strand, 5989402 - 5989656
Alignment:
Q  25 gtgtgttgtctttgtcaaactacaagagtatcactgaggttcccaaatctattggaaatttgttatacctgcggtacttaaatctttctcacactaatat 124  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||| ||| |||||| |||||||||||||| |||||    
T  5989402 gtgtgttatctttgtcaaactacaagagtatcactaaggttcccaagtctattggaaatttggtatacttgcagtactttaatctttctcacacaaatat 5989501  T
Q  125 tgaaagattgccttatgaaacatgcaagctttacaatctacagttcttgttattggcaggctgtagaaagctcgttgaattgcccgaggacataggagaa 224  Q
    |||||| ||||||| |||||||||||| ||||||||||| || |||||||| |||   ||||||| || |||| |||| || || |||||||| ||| ||    
T  5989502 tgaaaggttgccttctgaaacatgcaatctttacaatcttcaattcttgttgttgttgggctgtaaaaggctcattgagttaccggaggacatgggaaaa 5989601  T
Q  225 ttggtcaatctacagtgtcttgacattagtgacactgcattgggggagatgcccg 279  Q
    ||||||||| | |     |||||| ||| |||||||||||||  |||||||||||    
T  5989602 ttggtcaatttgcgccaccttgacgttaatgacactgcattgacggagatgcccg 5989656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0267 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 11 - 118
Target Start/End: Original strand, 19559 - 19666
Alignment:
Q  11 gatgaaacagttgcgtgtgttgtctttgtcaaactacaagagtatcactgaggttcccaaatctattggaaatttgttatacctgcggtacttaaatctt 110  Q
    ||||||||| || || ||| |||| ||||||||||||| ||||||||| ||| | ||||| ||||||||||||||| |||  ||||| |||||||||||     
T  19559 gatgaaacaattacgcgtgctgtcgttgtcaaactacaggagtatcaccgagttgcccaattctattggaaatttgatatgtctgcgatacttaaatctc 19658  T
Q  111 tctcacac 118  Q
    ||| ||||    
T  19659 tctaacac 19666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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