View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2133_high_16 (Length: 299)
Name: NF2133_high_16
Description: NF2133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2133_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 42741595 - 42741308
Alignment:
| Q |
1 |
taatatcttaatccaaatgcctttacgaccgtcaaggaagttcaaagatgttgtcacgaaagtaagtggtcagcatataaaagttacgaggactggtcga |
100 |
Q |
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|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
42741595 |
taatatcttaatccaaatgcctttactaccttcaaggaagttcaaagatgttgtcacgaaaggaagtggtcagcatataaaagttacgaggactggtcga |
42741496 |
T |
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| Q |
101 |
ggaggtgaattcacttctaaatagtttcaagaaataagtaaagaatattgaatcatacgttctcggttatggttcaaattgtacaacttaaacaaacata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42741495 |
ggaggtgaattcacttctaaatagtttcaagaaataagtaaagaatattgaatcatacgttctcggttatggttcaaattgtacaacttaaacaaacata |
42741396 |
T |
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| Q |
201 |
agattatagttcaccgagatgtggtcttggatgaagaaaaacaatcgtaaagattattacttacctatattcaatattacttacctat |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
42741395 |
agattatagttcaccgagatgtggtcttggatgaagaaaaacaatcgtaaagattattacttacccatattcaatattacttacctat |
42741308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 21745719 - 21745445
Alignment:
| Q |
1 |
taatatcttaatccaaatgcctttacga----ccgtcaaggaagttcaaagatgttgtcacgaaagtaagtggtcagcatataaaagttacgaggactgg |
96 |
Q |
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|||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
21745719 |
taatatcttaatccaaatgcctttactatttaccttcaaggaagttcaaagatgttgtcacgaaaggaagtggtcagcatataaaagttacgaggactgg |
21745620 |
T |
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| Q |
97 |
tcgaggaggtgaattcacttctaaatagtttcaagaaataagtaaagaatattgaatcatacgttctcggttatggttcaaattgtacaacttaaacaaa |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21745619 |
tcgaggaggtgaattcacttctaaatagtttcaagaaataagtaaagaatattgaatcatacgttctcggttatggttcaaattgtacaacttaaacaaa |
21745520 |
T |
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| Q |
197 |
cataagattatagttcaccgagatgtggtcttggatgaagaaaaacaatcgtaaagattattacttacctatatt |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21745519 |
cataagattatagttcaccgagatgtggtcttggatgaagaaaaacaatcgtaaagattattacttacctatatt |
21745445 |
T |
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