View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2133_high_19 (Length: 250)
Name: NF2133_high_19
Description: NF2133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2133_high_19 |
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| [»] scaffold0693 (1 HSPs) |
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Alignment Details
Target: scaffold0693 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: scaffold0693
Description:
Target: scaffold0693; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 3270 - 3020
Alignment:
| Q |
1 |
attgaagttccgtattgtagaacaagctgagaaagagtgtttgcataattgaagcatgttatacccagcagctgcagatgtcacatacaacaagatcctn |
100 |
Q |
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| T |
3270 |
attgaagttccgtattgtagaacaagctgagaaagagtgtttgcataattgaagcatgttatacccagcagctgcagatgtcacatacaacaagatccta |
3171 |
T |
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| Q |
101 |
nnnnnncatacaaaaat-----------gatcatggtatatacttcaacataaaatgtgagaacagacaaataaagaagaagaattttacttgagagcat |
189 |
Q |
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||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3170 |
aaaaaacatacaaaaattcctaattcaagatcatggtacatatttcaacataaaatgtgagaacagacaaataaagaagaagaattttacttgagagcat |
3071 |
T |
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| Q |
190 |
ccaagtccttgtaagtagcttttttcttaatcattaatattacaacctttg |
240 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3070 |
ccaagtccttgtaagtagctttcttcttaatcattaatattacaacctttg |
3020 |
T |
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