View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2133_high_2 (Length: 593)
Name: NF2133_high_2
Description: NF2133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2133_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 567; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 11 - 577
Target Start/End: Complemental strand, 41208591 - 41208025
Alignment:
| Q |
11 |
cataggattgatgtacttgtttcctaatcagaagcaacttgtaacttaccttctttgattcaatgaatttatgattggttttttctttccataattttct |
110 |
Q |
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| T |
41208591 |
cataggattgatgtacttgtttcctaatcagaagcaacttgtaacttaccttctttgattcaatgaatttatgattggttttttctttccataattttct |
41208492 |
T |
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| Q |
111 |
atcataggattaaagtaattgtttcctaatcagaaacattttgtggtttttacttcgttgattcaatgttgttgcttgatagatactcataattaagttg |
210 |
Q |
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| T |
41208491 |
atcataggattaaagtaattgtttcctaatcagaaacattttgtggtttttacttcgttgattcaatgttgttgcttgatagatactcataattaagttg |
41208392 |
T |
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| Q |
211 |
taagagaaggatggtaagtgtaatttatgttaagtttctgttgtttgttttgttcaggaagatatttttcagtcagttggtgttcctttggttagaaatg |
310 |
Q |
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| T |
41208391 |
taagagaaggatggtaagtgtaatttatgttaagtttctgttgtttgttttgttcaggaagatatttttcagtcagttggtgttcctttggttagaaatg |
41208292 |
T |
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| Q |
311 |
ctttagctggttacaacacttcaattctatcatatggccaggtactactatttgatgtttgctgtattgtttcaaccttttagtagggaaaaaatgtttg |
410 |
Q |
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| T |
41208291 |
ctttagctggttacaacacttcaattctatcatatggccaggtactactatttgatgtttgctgtattgtttcaaccttttagtagggaaaaaatgtttg |
41208192 |
T |
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| Q |
411 |
gtatatttgatggactaatgagatggaggtttattcttttttgactctttgctagtctggaagtggaaagacatatacaatgtggggtcccccaagtgcc |
510 |
Q |
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| T |
41208191 |
gtatatttgatggactaatgagatggaggtttattcttttttgactctttgctagtctggaagtggaaagacatatacaatgtggggtcccccaagtgcc |
41208092 |
T |
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| Q |
511 |
atgtttgaggagccctcacctcaaagtcacaaaggaattgtacctcggatcttccaaatgttgtttt |
577 |
Q |
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| T |
41208091 |
atgtttgaggagccctcacctcaaagtcacaaaggaattgtacctcggatcttccaaatgttgtttt |
41208025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 261 - 355
Target Start/End: Complemental strand, 22216266 - 22216172
Alignment:
| Q |
261 |
tgttcaggaagatatttttcagtcagttggtgttcctttggttagaaatgctttagctggttacaacacttcaattctatcatatggccaggtac |
355 |
Q |
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| T |
22216266 |
tgttcaggaagatgtttttcagtcggttggtgttcccttggttcgaaatgctttagctggttacaacacttcaattctgtcatatggccaggtac |
22216172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 464 - 577
Target Start/End: Complemental strand, 22216068 - 22215955
Alignment:
| Q |
464 |
agtctggaagtggaaagacatatacaatgtggggtcccccaagtgccatgtttgaggagccctcacctcaaagtcacaaaggaattgtacctcggatctt |
563 |
Q |
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| T |
22216068 |
agtctggaagcggaaagacttatacaatgtggggttcgccaagtgccatggctgaggatccctcgcgtcatagtcaacagggaattgttcctcggatttt |
22215969 |
T |
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| Q |
564 |
ccaaatgttgtttt |
577 |
Q |
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| T |
22215968 |
ccgaatgttatttt |
22215955 |
T |
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