View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2133_high_22 (Length: 249)
Name: NF2133_high_22
Description: NF2133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2133_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 7 - 233
Target Start/End: Original strand, 42741567 - 42741792
Alignment:
| Q |
7 |
gtagcaaaggcatttggattaagatattacatacnnnnnnnnctttcacgagaatttttacatcaccaccaaatgagacattaattgtcacttactgatt |
106 |
Q |
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| T |
42741567 |
gtagtaaaggcatttggattaagatattacatactttttt--ctttcatgagaatttttacatcaccaccaaatgagacattaattgtcacttactgatt |
42741664 |
T |
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| Q |
107 |
catcaagatccaagaatatatatgctcatttgttcgcacatatggttgcttgcaccattgttaaggtaccatgaatttcc-ttaacttcattacttccac |
205 |
Q |
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| T |
42741665 |
catcaagatccaagaatatatatgctcatttgttcgcacatatggttgcttgcaccattgttaaggtaccatgaatttcctttaacttcattacttccac |
42741764 |
T |
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| Q |
206 |
atgctagcaacattgtttcaaaacttct |
233 |
Q |
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| T |
42741765 |
atgctagcaacattgtttcaaaacttct |
42741792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 12 - 233
Target Start/End: Original strand, 21745696 - 21745911
Alignment:
| Q |
12 |
aaaggcatttggattaagatattacatacnnnnnnnnctttcacgagaatttttacatcaccaccaaatgagacattaattgtcacttactgattcatca |
111 |
Q |
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| T |
21745696 |
aaaggcatttggattaagatattacatactttttt--ctttcatgagaatttttacatcaccaccaaatgagacatt----gtcacttactgattcatca |
21745789 |
T |
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| Q |
112 |
agatccaagaatatatatgctcatttgttcgcacatatggttgcttgcaccattgttaaggtaccatgaatttccttaacttcattacttccacatgcta |
211 |
Q |
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| T |
21745790 |
agatccaagaatatatatgctcatttgttcgcacatatggttgcttgcaccattgttaaggtaccatgaatttccttaacttcattacttccacatgcta |
21745889 |
T |
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| Q |
212 |
gcaacattgtttcaaaacttct |
233 |
Q |
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| T |
21745890 |
gcaacattgtttcaaaacttct |
21745911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 227
Target Start/End: Original strand, 4890685 - 4890721
Alignment:
| Q |
191 |
cttcattacttccacatgctagcaacattgtttcaaa |
227 |
Q |
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| T |
4890685 |
cttcattacttccacgtgctagcagcattgtttcaaa |
4890721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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