View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2133_high_26 (Length: 219)
Name: NF2133_high_26
Description: NF2133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2133_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 3e-93; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 3776663 - 3776856
Alignment:
| Q |
18 |
actaccattatactttccttcaatgaaagcaaaattcattgtcataagaaaacctatttcttcctgtgaagcagatgcatagaatccttgagctctacca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3776663 |
actaccattatactttccttcaatgaaagcaaaattcattgtcataagaaaacctatttcttcctgtgaagcagatgcatagaatccttgagctctacca |
3776762 |
T |
|
| Q |
118 |
acaagtttagaactcaattcgggtcctaaagttaaagggttgtcaatcatgctaactaaaccnnnnnnngtggttgagtttacttttgatgatg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3776763 |
acaagtttagaactcaattcgggtcctaaagttaaagggttgtcaatcatgctaactaaaccaaaaaaagtggttgagtttacttttgatgatg |
3776856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 3780976 - 3781169
Alignment:
| Q |
18 |
actaccattatactttccttcaatgaaagcaaaattcattgtcataagaaaacctatttcttcctgtgaagcagatgcatagaatccttgagctctacca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
3780976 |
actaccattatactttccttcaatgaaagcaaaattcattgtcataagaaaacctagttcttcttgtgaagcagatgcatagaatccttgagctcttcca |
3781075 |
T |
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| Q |
118 |
acaagtttagaactcaattcgggtcctaaagttaaagggttgtcaatcatgctaactaaaccnnnnnnngtggttgagtttacttttgatgatg |
211 |
Q |
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||||| |||||||||| ||| |||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||| |
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| T |
3781076 |
acaagcttagaactcagttctggtcctaaagttaaagggttgtcaatcatgttaaccaaaccaaaagcggtggttgagtttacttttgatgatg |
3781169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 18 - 179
Target Start/End: Original strand, 3762582 - 3762743
Alignment:
| Q |
18 |
actaccattatactttccttcaatgaaagcaaaattcattgtcataagaaaacctatttcttcctgtgaagcagatgcatagaatccttgagctctacca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
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| T |
3762582 |
actaccattatactttccttcaatgaaagcaaaattcactgtcataagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagctcttcca |
3762681 |
T |
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| Q |
118 |
acaagtttagaactcaattcgggtcctaaagttaaagggttgtcaatcatgctaactaaacc |
179 |
Q |
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|||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
3762682 |
acaagtttagaactcagttcgggtcctaaagtcaaagggttgtcaatcatgcggactaaacc |
3762743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 3751603 - 3751742
Alignment:
| Q |
18 |
actaccattatactttccttcaatgaaagcaaaattcattgtcataagaaaacctatttcttcctgtgaagcagatgcatagaatccttgagctctacca |
117 |
Q |
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|
||||||||||||||||||||||||||||||||| ||||| | ||| |||||||| | || || ||||| |||||||||||||| ||||||||| | ||| |
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| T |
3751603 |
actaccattatactttccttcaatgaaagcaaagttcatagccatgagaaaaccaaaatcatcttgtgatgcagatgcatagaaaccttgagcttttcca |
3751702 |
T |
|
| Q |
118 |
acaagtttagaactcaattcgggtcctaaagttaaagggt |
157 |
Q |
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||||| ||||||||||||| ||||||| ||| ||||||| |
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| T |
3751703 |
acaagcttagaactcaattgtggtcctatagtcaaagggt |
3751742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 22 - 179
Target Start/End: Original strand, 3745790 - 3745947
Alignment:
| Q |
22 |
ccattatactttccttcaatgaaagcaaaattcattgtcataagaaaacctatttcttcctgtgaagcagatgcatagaatccttgagctctaccaacaa |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| | ||| | |||| | || |||| ||| ||||||||||| || ||||||||| | ||||||| |
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| T |
3745790 |
ccattatactttccttcaatgaaagcaaaagtcatagccatgaacaaactaaactcatcctttgatgcagatgcatacaacccttgagcttttccaacaa |
3745889 |
T |
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| Q |
122 |
gtttagaactcaattcgggtcctaaagttaaagggttgtcaatcatgctaactaaacc |
179 |
Q |
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| |||||||||| || |||||||||||||||||||||||||| ||| | |||||||| |
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| T |
3745890 |
gcttagaactcatttttggtcctaaagttaaagggttgtcaataatgttgactaaacc |
3745947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 22 - 169
Target Start/End: Original strand, 3755474 - 3755621
Alignment:
| Q |
22 |
ccattatactttccttcaatgaaagcaaaattcattgtcataagaaaacctatttcttcctgtgaagcagatgcatagaatccttgagctctaccaacaa |
121 |
Q |
| |
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|||||||||||||||||| | |||||||||||||| | |||||| ||| | | ||| || | | |||||||||||||||||||||||| | ||||||| |
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| T |
3755474 |
ccattatactttccttcagtaaaagcaaaattcatagccataagcaaatcaacttcatctttgcatgcagatgcatagaatccttgagcttttccaacaa |
3755573 |
T |
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| Q |
122 |
gtttagaactcaattcgggtcctaaagttaaagggttgtcaatcatgc |
169 |
Q |
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|||||| |||| | ||||||||||||||||||||||| ||||||| |
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| T |
3755574 |
tcttagaattcaactgtggtcctaaagttaaagggttgtcgatcatgc |
3755621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 22 - 169
Target Start/End: Original strand, 3767002 - 3767149
Alignment:
| Q |
22 |
ccattatactttccttcaatgaaagcaaaattcattgtcataagaaaacctatttcttcctgtgaagcagatgcatagaatccttgagctctaccaacaa |
121 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||| | |||||| ||| | | ||| || | | |||||||||||||||||||||||| | ||||||| |
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| T |
3767002 |
ccattatactttccttcagtaaaagcaaaattcatagccataagcaaatcaacttcatctttgcatgcagatgcatagaatccttgagcttttccaacaa |
3767101 |
T |
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| Q |
122 |
gtttagaactcaattcgggtcctaaagttaaagggttgtcaatcatgc |
169 |
Q |
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|||||| |||| | ||||||||||||||||||||||| ||||||| |
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| T |
3767102 |
tcttagaattcaactgtggtcctaaagttaaagggttgtcgatcatgc |
3767149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 94 - 169
Target Start/End: Original strand, 3771304 - 3771379
Alignment:
| Q |
94 |
gcatagaatccttgagctctaccaacaagtttagaactcaattcgggtcctaaagttaaagggttgtcaatcatgc |
169 |
Q |
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|||| ||| ||||||| | | |||||||| |||||||||| ||| ||||||||||||||||||||||| ||||||| |
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| T |
3771304 |
gcatcgaacccttgagattttccaacaagcttagaactcagttctggtcctaaagttaaagggttgtcgatcatgc |
3771379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 94 - 179
Target Start/End: Complemental strand, 25985461 - 25985376
Alignment:
| Q |
94 |
gcatagaatccttgagctctaccaacaagtttagaactcaattcgggtcctaaagttaaagggttgtcaatcatgctaactaaacc |
179 |
Q |
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|
|||||||||||||| ||| | ||||| | ||| |||||||||| |||||||| ||||||||||| ||||||||| |||||||||| |
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| T |
25985461 |
gcatagaatccttgtgcttttccaaccaatttggaactcaattgaggtcctaaggttaaagggttctcaatcatgttaactaaacc |
25985376 |
T |
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